Sequence 1: | NP_648755.1 | Gene: | Msh6 / 39654 | FlyBaseID: | FBgn0036486 | Length: | 1190 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_002430.3 | Gene: | MSH3 / 4437 | HGNCID: | 7326 | Length: | 1137 | Species: | Homo sapiens |
Alignment Length: | 1240 | Identity: | 303/1240 - (24%) |
---|---|---|---|
Similarity: | 510/1240 - (41%) | Gaps: | 267/1240 - (21%) |
- Green bases have known domain annotations that are detailed below.
Fly 24 SPAFDKKKLTPSVKTDPDASKSEKENLQNQQPKVKDGKKEASKPAAKRKLPISDDEPASGQRKRK 88
Fly 89 RIVQPESDSEPEMEVTKSEDDFSDCASDYEPDENEASDDSVSSGAEEVSPSENDMSVDSPTPKKS 153
Fly 154 RKKSKILNNNN--NNEPSSKKVKLEST--IQLAEGATFQEKLKNLQSNAKQDASYDDIVTNTSNL 214
Fly 215 DEPVVWPHQKLEFLQPDKIKDKEGRRPDHPDYDKSTLHVPEKFLNGLSPGVRQWWVLKSDNYDCV 279
Fly 280 LFFKVGKFYELYHMDADVGVNELG-FTYMRGEFAHSGFPEISFDKMSTILVDRGFKVARVEQTET 343
Fly 344 PDMMTERCKRIKATKFDKVVAREICQITNRGTQVFGSQCKIGPNHQP------------------ 390
Fly 391 -NYMLAIVEKDEGTCSR------YGVCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHHMPVLFLNE 448
Fly 449 KSALSQRTQQIVRTVLGGILKEP---------VPGNGKHACSAEKTLKLLAERYYAGPGSDDNWP 504
Fly 505 LVLRTMQSDMDHLGLTPNDNYKLALKALGQCIFFIHKCKLEPKVLPMARYQLYVPPDQLADAKPA 569
Fly 570 VASTL--RRSHMVLDATTLSNLRIIGEE------HSLLSTLDHCCTKFGKRLLHHWLCAPSCDVS 626
Fly 627 VIKERQDAIGELIRMPTEL-QEVRALLAPMPDFERNLAQIHLFGNKQIKQMDHPDSRAILFEEKL 690
Fly 691 YNKQKLQGFMAVLKGFNDLTK-----LPTMFHQCKTTLLKRITQLPESGGSFPDLSKELQYFATA 750
Fly 751 FDHDAAA---KTGVIAPQAGMDA------EYDAAMDSI----GEVEKRLKTYLVEQERHFGCRIT 802
Fly 803 YFGSDKKRYQLDVPESHASKANKSYTLEGQTKGKKPSRRYTTAETRALLKDMQHAEDTRNMVLKD 867
Fly 868 LARR---LFEKFSNHYDQWKQCIDCVANLDVLGSLAEYAGQQMVICVPELVSDADQPFIQLEEGY 929
Fly 930 HPCANA-----STYIPNGLELGTASEAPLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPAASC 989
Fly 990 RLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIA-A 1053
Fly 1054 SVVNFLANLKCRTLFSTHYHNLIDFFHN-DKRITLGHMACMV-ENEDNADP-----TQETVTFLY 1111
Fly 1112 KYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEAIALQRKITAKIVAA--TAGN-EDTKK- 1172
Fly 1173 -EKIN 1176 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Msh6 | NP_648755.1 | MttA_Hcf106 | <44..156 | CDD:294511 | 22/111 (20%) |
MutS | 261..1186 | CDD:223327 | 261/999 (26%) | ||
MutS_I | 263..375 | CDD:279898 | 25/112 (22%) | ||
MutS_II | 391..508 | CDD:282973 | 27/131 (21%) | ||
MutS_III | 584..>667 | CDD:282977 | 31/89 (35%) | ||
MutS_IV | 767..859 | CDD:282975 | 17/101 (17%) | ||
ABC_MSH6_euk | 924..1140 | CDD:213253 | 100/228 (44%) | ||
MSH3 | NP_002430.3 | Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 31..122 | 19/63 (30%) | |
Interaction with EXO1. /evidence=ECO:0000269|PubMed:11427529 | 75..297 | 51/300 (17%) | |||
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite | 201..222 | 5/30 (17%) | |||
MutS | 225..1111 | CDD:223327 | 256/1026 (25%) | ||
MutS_I | 230..343 | CDD:279898 | 29/166 (17%) | ||
MutS_II | 366..523 | CDD:282973 | 37/192 (19%) | ||
MutS_III | 540..680 | CDD:282977 | 41/169 (24%) | ||
MutS_III | 717..783 | CDD:302670 | 16/77 (21%) | ||
MutS_V | 846..1094 | CDD:278891 | 106/251 (42%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0249 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 1 | 1.010 | - | - | QHG53698 | |
OrthoDB | 1 | 1.010 | - | - | D138168at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
User_Submission | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.830 |