Sequence 1: | NP_648755.1 | Gene: | Msh6 / 39654 | FlyBaseID: | FBgn0036486 | Length: | 1190 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_502531.1 | Gene: | msh-5 / 178268 | WormBaseID: | WBGene00003421 | Length: | 1369 | Species: | Caenorhabditis elegans |
Alignment Length: | 763 | Identity: | 174/763 - (22%) |
---|---|---|---|
Similarity: | 321/763 - (42%) | Gaps: | 151/763 - (19%) |
- Green bases have known domain annotations that are detailed below.
Fly 472 VPGNGKHACSAEKTLKLLAERYYAGPGSDDNWPLVLRTMQSDMDHLGLTPNDNYKLALKALGQCI 536
Fly 537 FFIHKCKLEPKVLPMARYQLYVPPDQLADAKPAVA-STLRRSHMV-LDATTLSNLRII------- 592
Fly 593 ---GEEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDVSVIKERQDAI--------GEL-IRMPTEL 645
Fly 646 QEVRALLAPMPDFERNLAQ-IHLFGNKQIKQMDHPDSRAILFEEKLYNKQKLQGFMAVLKGFNDL 709
Fly 710 TKLPTMFHQ--------CKTTLLKRITQLPESGGSFPDLSK-ELQYFATAFDHDAAAKTGVIAPQ 765
Fly 766 AGMDAEYDAAMDSIGEVEKRLKTYLVEQERHFG--------C-RITYFGSDKKRYQLDVPESHAS 821
Fly 822 KANKSYTLEGQTKGKKPSRRYTTAETRALLKD-MQHAEDTRNMVLKDLARRLFEKFSNHYDQWKQ 885
Fly 886 CI----DCVANLDVLGSLAEYAGQQMVICVPELVSDADQPFIQLEEGYHPCA---NASTYIPNGL 943
Fly 944 ELGTASEAPLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPAASCRLSLVDRIFTRLGAQDDIL 1008
Fly 1009 AGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIAASVVNFLANL---KCRTLF-S 1069
Fly 1070 THYHNLIDFFHNDKRITLGHMACMVENEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQ 1134
Fly 1135 GIIKRAYELSKKVEAIALQRKITAKIVAATAGNEDTKKEKINALKDLL 1182 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Msh6 | NP_648755.1 | MttA_Hcf106 | <44..156 | CDD:294511 | |
MutS | 261..1186 | CDD:223327 | 174/763 (23%) | ||
MutS_I | 263..375 | CDD:279898 | |||
MutS_II | 391..508 | CDD:282973 | 7/35 (20%) | ||
MutS_III | 584..>667 | CDD:282977 | 25/102 (25%) | ||
MutS_IV | 767..859 | CDD:282975 | 21/101 (21%) | ||
ABC_MSH6_euk | 924..1140 | CDD:213253 | 70/222 (32%) | ||
msh-5 | NP_502531.1 | MutS_III | 283..>382 | CDD:282977 | 22/98 (22%) |
MUTSd | 305..611 | CDD:214710 | 75/368 (20%) | ||
MutS_IV | 449..543 | CDD:282975 | 21/98 (21%) | ||
ABC_MSH5_euk | 603..811 | CDD:213248 | 67/214 (31%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0249 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D122599at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.820 |