Sequence 1: | NP_648755.1 | Gene: | Msh6 / 39654 | FlyBaseID: | FBgn0036486 | Length: | 1190 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_495451.1 | Gene: | him-14 / 174157 | WormBaseID: | WBGene00001872 | Length: | 842 | Species: | Caenorhabditis elegans |
Alignment Length: | 897 | Identity: | 212/897 - (23%) |
---|---|---|---|
Similarity: | 362/897 - (40%) | Gaps: | 207/897 - (23%) |
- Green bases have known domain annotations that are detailed below.
Fly 393 MLAIVEKDEGTCSRY-GVCFIDTSIGDFHLGEFEDDKNCSRLLTLVSHH----MPVLFLNEKSAL 452
Fly 453 SQRTQQIVRTVLGGILKEPVPGNGKHACSAEKTLKLLAERYYAGPGSDDNWPLVLRTMQSDMDHL 517
Fly 518 GLTPND---NYKLALKALGQCIFFIHKCKLEPKVLPMARYQLYVPPDQLADAKPAVASTLR---- 575
Fly 576 --RSHMVLDATTLSNLR--IIGEEHSLLSTLDHCCTKFGKRLLHHWLCAPSCDVSVIKERQDAIG 636
Fly 637 ELIRMPTELQEVRALLAPMPDFERNLAQ-IHLFGNKQIKQMDHPDSRAILFEEKLYNKQKLQGFM 700
Fly 701 AVLKGFNDLTKLPTMFHQC---------KTTLLK--RITQL-----PESGGSFPDLSKE------ 743
Fly 744 -----LQYFATAFDHDAAAKT------GVIAPQAGMDAEYDAAMDSIGEVEKRLKTYLVEQERHF 797
Fly 798 GCRITYFGSDKK-----RYQLDVPESHASKANKSYTLEGQTKGKKPSRRYTTAETR--ALLKDMQ 855
Fly 856 HAEDTRNMVLKDLARRLFEKFSNHYDQWKQCIDCVANLDVLGSLAEYAGQQMVICVPELVSDADQ 920
Fly 921 PFIQLEEGYHPCA---NASTYIPNGLELGTASEAPLSLLTGPNMGGKSTLMREVGLLVIMAQIGA 982
Fly 983 HIPAASCRLSLVDRIFTRLGAQDDILAGHSTFLVELNETSLILKHATCHSLVLLDELGRGTATYD 1047
Fly 1048 GTAIAASVVNFLANLKCRTLFSTH---------YHNLIDFFHNDKRITLGHMACMVENEDNADPT 1103
Fly 1104 QETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAYELSKKVEA---------IALQRKI--- 1156
Fly 1157 -------TAKIVAATAGNE-DTKKEKINALKDLLKQL-----------KMCQ 1189 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Msh6 | NP_648755.1 | MttA_Hcf106 | <44..156 | CDD:294511 | |
MutS | 261..1186 | CDD:223327 | 209/892 (23%) | ||
MutS_I | 263..375 | CDD:279898 | |||
MutS_II | 391..508 | CDD:282973 | 23/119 (19%) | ||
MutS_III | 584..>667 | CDD:282977 | 29/85 (34%) | ||
MutS_IV | 767..859 | CDD:282975 | 21/98 (21%) | ||
ABC_MSH6_euk | 924..1140 | CDD:213253 | 67/227 (30%) | ||
him-14 | NP_495451.1 | MutS_III | 215..>304 | CDD:282977 | 30/88 (34%) |
MUTSd | 236..565 | CDD:214710 | 87/381 (23%) | ||
ABC_MSH4_euk | 553..753 | CDD:213249 | 65/218 (30%) | ||
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0249 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D138168at2759 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
3 | 2.820 |