Sequence 1: | NP_648755.1 | Gene: | Msh6 / 39654 | FlyBaseID: | FBgn0036486 | Length: | 1190 | Species: | Drosophila melanogaster |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_491202.1 | Gene: | msh-2 / 171938 | WormBaseID: | WBGene00003418 | Length: | 849 | Species: | Caenorhabditis elegans |
Alignment Length: | 1008 | Identity: | 228/1008 - (22%) |
---|---|---|---|
Similarity: | 388/1008 - (38%) | Gaps: | 294/1008 - (29%) |
- Green bases have known domain annotations that are detailed below.
Fly 270 VLKSDNYDCVLFFKVGKFYELYHMDA----------DVGVNELGFTYMRGEFAHSGFPEISFD-- 322
Fly 323 -KMSTILVDRGFKVARVEQTETPDMMTERCKRIKATKFDKVVAREI----CQI------------ 370
Fly 371 TNRGT--QVFGSQCKIGPNHQPNYMLAIVEKDEGTCSRYGVCFIDTSIGDFHLGEFEDDKNCSRL 433
Fly 434 LTLVSHHMPV--LFLNEKSALSQRTQQIVRTVLGGILKEPVPGNGKHACSAEKTLKLLA-----E 491
Fly 492 RYYAGPGSDDNWPLVLRTMQSDMDHLGLTPNDNYKLALKALGQCIFFIHKCKLEPKVLPMARYQL 556
Fly 557 YVPPDQLADAKPAVASTLRRSHMVLDATTLSNLRII---------GEEHSLLSTLDHCCTKFGKR 612
Fly 613 LLHHWLCAPSCDVSVIKERQDAIGELIRMPTELQEVR-ALLAPMPDFERNLAQIHLFGNKQIKQM 676
Fly 677 DHPDSRAILFEEKLYNKQKLQGFMAVLKGFNDLTKLPTMFHQCKT---TLLKRITQLPESGGSFP 738
Fly 739 DLSKELQYFATAFDHDAAAKTGVIAPQAGMDAEYDAAMDSIGEVEKRLKTYLVEQERHFGCRITY 803
Fly 804 FGSDKK-RYQLD-VPESH------------ASKANKSYTLEGQTKGKKPSR--------RYTTAE 846
Fly 847 TRAL-LKDMQHAEDTRNMVLKDLARRL------FEKFSNHYDQWKQCI----------------- 887
Fly 888 --DCVANLDVLGSLAEYAGQQMVICVPELVSDADQPFIQLEEGYHPCANAST---YIPNGLELGT 947
Fly 948 ASEAPLSLLTGPNMGGKSTLMREVGLLVIMAQIGAHIPAASCRLSLVDRIFTRLGAQDDILAGHS 1012
Fly 1013 TFLVELNETSLILKHATCHSLVLLDELGRGTATYDGTAIAASVVNFLAN-LKCRTLFSTHYHNLI 1076
Fly 1077 DFFHNDKRITLGHMACMVENEDNADPTQETVTFLYKYTAGACPKSYGFNAAKLAGMPQGIIKRAY 1141
Fly 1142 ELSKKVEAIALQRKITAKIVAATAGNEDTKKEK 1174 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
Msh6 | NP_648755.1 | MttA_Hcf106 | <44..156 | CDD:294511 | |
MutS | 261..1186 | CDD:223327 | 228/1008 (23%) | ||
MutS_I | 263..375 | CDD:279898 | 27/133 (20%) | ||
MutS_II | 391..508 | CDD:282973 | 20/123 (16%) | ||
MutS_III | 584..>667 | CDD:282977 | 27/92 (29%) | ||
MutS_IV | 767..859 | CDD:282975 | 22/114 (19%) | ||
ABC_MSH6_euk | 924..1140 | CDD:213253 | 80/219 (37%) | ||
msh-2 | NP_491202.1 | MutS | 17..847 | CDD:223327 | 228/1007 (23%) |
Blue background indicates that the domain is not in the aligned region. |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 0 | 0.000 | Not matched by this tool. | |||
eggNOG | 1 | 0.900 | - | - | E1_COG0249 | |
Hieranoid | 0 | 0.000 | Not matched by this tool. | |||
Homologene | 0 | 0.000 | Not matched by this tool. | |||
Inparanoid | 0 | 0.000 | Not matched by this tool. | |||
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D122599at33208 | |
OrthoFinder | 0 | 0.000 | Not matched by this tool. | |||
OrthoInspector | 0 | 0.000 | Not matched by this tool. | |||
orthoMCL | 0 | 0.000 | Not matched by this tool. | |||
Panther | 0 | 0.000 | Not matched by this tool. | |||
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 0 | 0.000 | Not matched by this tool. | |||
SonicParanoid | 0 | 0.000 | Not matched by this tool. | |||
SwiftOrtho | 1 | 1.000 | - | - | ||
TreeFam | 0 | 0.000 | Not matched by this tool. | |||
4 | 3.820 |