DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdi and qsox2

DIOPT Version :9

Sequence 1:NP_001287070.1 Gene:Pdi / 39651 FlyBaseID:FBgn0286818 Length:496 Species:Drosophila melanogaster
Sequence 2:XP_009300239.1 Gene:qsox2 / 559603 ZFINID:ZDB-GENE-110203-4 Length:656 Species:Danio rerio


Alignment Length:608 Identity:119/608 - (19%)
Similarity:221/608 - (36%) Gaps:187/608 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 EEGVLVATVDNFKQLIADNEFV-LVEFYAPWCGHCKALAPEYAKAAQQLAEKESPIKLAKVDATV 89
            |:.|::.:.|:.||.:.::... ||:||:.|||||...:|.:...|..:.:....|::..||...
Zfish    29 EDPVVILSSDSLKQTVLNSSSAWLVQFYSSWCGHCIQYSPTWKALAGDVKDWAQAIRIGVVDCAH 93

  Fly    90 EG--ELAEQYAVRGYPTLKFFRS------------GSPVEYSGGRQ------------------- 121
            |.  ::.:::.:..|||.::|::            |:..|....||                   
Zfish    94 EKNFDICKEFGIHFYPTFRYFKAHDTTNDFGKTYQGADRELQTVRQLMVNFIQNHTRQDWPVGCP 158

  Fly   122 ------AADIIAWVTKKTGPPAKDLTS--VADAEQFLKDNEIAIIGFFKDLESEEAKTFTKVANA 178
                  :.|:::.:.|||    :..|:  |.|...:: ..|:.:     ||...|. ...|.|.:
Zfish   159 PLHPARSEDVLSLMGKKT----EHYTAVIVEDGNSYI-GREVIL-----DLMPYEG-LVVKRALS 212

  Fly   179 LDSFV---FGVSSNADVIAKYEAKDNGV-----------VLFKPFDDKKSVFEGELNEENLKKFA 229
            .|..:   .|:||   |.:.|..:.||.           ..|..|   ..:..|...:::.....
Zfish   213 SDQLLMDKLGISS---VPSAYLFQPNGTHTVLNVQKKLRFFFSSF---LKLLPGVHRKQSTSSLQ 271

  Fly   230 QVQSLPLI------VDFNHESASKIFGGSIKSHLLFFV--------SREGGHIEKYVDPLKEIAK 280
            :.|  |.|      |::.....||::...::|.|.:.:        :.||..::.:.|.:..:||
Zfish   272 RPQ--PGINGQGAQVEWKEFKKSKVYMADLESGLHYLLRVELATHKTLEGEELKTFKDFVTVVAK 334

  Fly   281 ---------KYRDDIL--FVTISSDEEDHTRIFEFFGMNK---------EEVP------------ 313
                     |..:.:|  .|::..::..:..|.:... ||         |:|.            
Zfish   335 LFPGHQSVVKLLETLLEWLVSLPLEKIPYDAILDLVN-NKMRISGLYLSEQVQWVGCQGSSVALR 398

  Fly   314 -------------TIRLIKLEEDMAKYKPESDDLSA-ETIEAFLKKFLD----GK----LKQHLL 356
                         |::.....:.:|....|.|.|:. :|:..::..|..    ||    :.|..|
Zfish   399 GYPCSLWTLFHVLTVQAANRPDALANTGFEDDPLAVLQTMRRYIGTFFGCQECGKHFEEMAQESL 463

  Fly   357 SQELPED------WDK-NPVKVLVSSNF-ESVALDKSKSVLVEFYAPW-----CGHCKQLAPIYD 408
            :|....|      |.| |.|...:|.:. |.....|::         |     |..|      ::
Zfish   464 NQVKTVDEAVLWLWRKHNQVNARLSGSMSEDPMFPKTQ---------WPTPDLCPTC------HE 513

  Fly   409 QLAEKYKDNEDIVIA--KMDSTANELESIKISSFPT---------IKYFRKEDNKV-IDFNL--D 459
            :....:..||.:|:|  |...:|:.: |.|.||..:         .|...|.::|: |:.||  .
Zfish   514 EQEGLHVWNEQMVLAFLKQHYSASNI-SPKYSSSQSEPGPPAPDKPKAITKPNSKIHINQNLKSP 577

  Fly   460 RTLDDFVKFLDANGEVADSEPVE 482
            ..|....|..|:.|||.....|:
Zfish   578 EILPKHQKRTDSGGEVEKHSGVQ 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdiNP_001287070.1 ER_PDI_fam 27..474 CDD:273457 114/597 (19%)
pdi_dom 33..133 CDD:273454 28/139 (20%)
PDI_b_family 137..231 CDD:239279 20/109 (18%)
PDI_b'_family 244..347 CDD:239280 23/156 (15%)
PDI_a_PDI_a'_C 368..469 CDD:239293 25/120 (21%)
qsox2XP_009300239.1 PDI_a_QSOX 30..141 CDD:239290 27/110 (25%)
Evr1_Alr 403..499 CDD:282612 19/95 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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