DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdi and tmx3b

DIOPT Version :9

Sequence 1:NP_001287070.1 Gene:Pdi / 39651 FlyBaseID:FBgn0286818 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_001039026.1 Gene:tmx3b / 553250 ZFINID:ZDB-GENE-060901-5 Length:484 Species:Danio rerio


Alignment Length:507 Identity:108/507 - (21%)
Similarity:194/507 - (38%) Gaps:126/507 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 VLVATV----DNFKQLIADNEFVLVEFYAPWCGHCKALAPEYAKAAQQLAEKESPIKLAKVDATV 89
            ||:|.|    |:||....::.: ||:|||||||:||.|.|.:.:...:|:...||:::.|:|||.
Zfish    16 VLLALVLDLDDSFKDSRMEDVW-LVDFYAPWCGYCKKLEPVWEEVGAELSRSGSPVRVGKMDATA 79

  Fly    90 EGELAEQYAVRGYPTLKFFRSGSPVEYSGGRQAADIIAWVTKKTGPPAKDLTSVADAEQFLKDNE 154
            ...:|.::.||||||:|..:......|.|.|...|||.:..:..||..:.|.|....|..||.:.
Zfish    80 YSGMASEFGVRGYPTIKLLKGDLAYNYKGPRTKDDIIEFANRVAGPAVRALPSRQMFEHVLKRHS 144

  Fly   155 IAIIGFFKDLESEEAKTFTKVANALDSFVFGVSSNADVIAKYEAKDN--GVVLFK-----PFDDK 212
            :..:  :...||...:.:.:||:.|..:.:..|::.:|:.:......  .||:||     .:|:.
Zfish   145 VLFL--YVGGESPLKEKYIEVASELIVYTYFFSASEEVLTEAVVLPELPSVVVFKDASFFTYDEY 207

  Fly   213 KSVFEGEL----NEENLKKFAQVQSLPLIVDFNHESASKIFGGSIKSHLLFFVSREGGHIEKYVD 273
            :   :|.|    |.|..:.:.|:....|   :......|:...::...     ..:..|..:...
Zfish   208 E---DGSLSSWVNRERFQSYLQIDGFTL---YELGETGKLVAIAVTDD-----KDQSDHSSRLKG 261

  Fly   274 PLKEIAKKYRD----DILFVTISSDEEDHTRIFEFFGMNKEEVPTIRLIKLEEDMAKYKPESDDL 334
            .::.:|.::|:    |..|..:|.::..::.|     |.:..:|:|.::....       |...|
Zfish   262 LIQRVATEHREQFNRDFQFGHMSGNDYINSLI-----MGEVSIPSIIILNTSN-------EQYFL 314

  Fly   335 SAETIE------AFLKKFLDGKLKQHLLSQELPEDWDKNPVKVLVSSNFESVALDKSKSVLVEF- 392
            .||.:|      .|....|||....:        ..|.      :....:.||.|...:::..| 
Zfish   315 PAEPVEDLQQMLQFFSSVLDGSAPAY--------GGDG------IFQRIKRVAYDARSTIMSVFR 365

  Fly   393 YAPWCG-------------HCKQLAPIYDQLAEKYKDNEDIVIAKMDSTANELESIKISSFPTIK 444
            .:|..|             .|..:.     .||.....||:.:.|.:....|.|.:         
Zfish   366 SSPLLGCFLFGLPLGVISLMCYGIC-----TAESDDGTEDLELMKAEEEEEEEERL--------- 416

  Fly   445 YFRKEDNKVIDFNLDRTLDDFVKFLDANGEVADSEPVEETEEEEEAPKKDEL 496
                                             :|..||.||:.:...::||
Zfish   417 ---------------------------------TERTEEEEEQTDRTAEEEL 435

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdiNP_001287070.1 ER_PDI_fam 27..474 CDD:273457 101/483 (21%)
pdi_dom 33..133 CDD:273454 38/103 (37%)
PDI_b_family 137..231 CDD:239279 21/104 (20%)
PDI_b'_family 244..347 CDD:239280 17/112 (15%)
PDI_a_PDI_a'_C 368..469 CDD:239293 14/114 (12%)
tmx3bNP_001039026.1 PDI_a_TMX3 27..123 CDD:239298 36/96 (38%)
Thioredoxin_6 153..328 CDD:290560 34/197 (17%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170591979
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.840

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