DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Pdi and pdia3

DIOPT Version :9

Sequence 1:NP_001287070.1 Gene:Pdi / 39651 FlyBaseID:FBgn0286818 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_989329.1 Gene:pdia3 / 394954 XenbaseID:XB-GENE-976328 Length:501 Species:Xenopus tropicalis


Alignment Length:520 Identity:187/520 - (35%)
Similarity:276/520 - (53%) Gaps:50/520 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 LICALFLAASYVAASAEAEVKVEEGVLVATVDNFKQLIADNEFVLVEFYAPWCGHCKALAPEYAK 68
            |:.|.||.|  |.|..:|   ....||..|.|||:..::.:..:||||:||||||||.|||||..
 Frog     5 LLGAFFLLA--VTAGTQA---AGSDVLDLTDDNFESTVSQHSILLVEFFAPWCGHCKKLAPEYEI 64

  Fly    69 AAQQLAEKESPIKLAKVDATVEGELAEQYAVRGYPTLKFFRSGSPV-EYSGGRQAADIIAWVTKK 132
            ||.:|   :..:.|||||.|.......:|.|.||||||.||.|... .|.|.|.|..|::.:.|:
 Frog    65 AATKL---KGTLSLAKVDCTANSNTCNKYGVSGYPTLKIFRDGEDSGSYDGPRTADGIVSTMKKQ 126

  Fly   133 TGPPAKDLTSVADAEQFLKDNEIAIIGFFKDLESEEAKTFTKVANAL-DSFVFGVSSNADVIAKY 196
            .||.:.||.||.:.|:|:.|.:.:::|||:||.|.....|.|.||.| |::.|..:...:::.||
 Frog   127 AGPASVDLRSVGEFEKFISDKDASVVGFFRDLYSGPHSEFLKAANTLRDNYRFAHTDEKELVDKY 191

  Fly   197 EAKDNGVVLFKP------FDDKKSVF--EGELNEENLKKFAQVQSLPLIVDFNHESASKIFGGSI 253
            ::...|.|||:|      |:|....|  :.::....:|||.|.....|......::...|.|   
 Frog   192 DSNGEGFVLFRPQHLANKFEDSSVTFPADEKITSSKIKKFIQDNIFGLCPHLTEDNKDLIQG--- 253

  Fly   254 KSHLLFFVSREGGHIEKYV-------DPLKEIAKKYRD---DILFVTISSDEEDHTRIFEF---F 305
            |..|:.:...:   .||.|       :.:.::||.:.|   .:.|...:.....| .:.||   .
 Frog   254 KDLLVAYYDVD---YEKNVKGTNYWRNRVMKVAKSFVDAGKKLNFAVANRKAFGH-EVTEFGLDA 314

  Fly   306 GMNKEEVPTIRLIKLEEDMAKYKPESD-DLSAETIEAFLKKFLDGKLKQHLLSQELPEDWDKNPV 369
            |..:..|..|:..|.|    ||..:.: ....:.:|.||:.:.|||||:::.|:.:||..| .||
 Frog   315 GTGELPVVGIKTAKGE----KYAMQEEFSRDGKALERFLQDYFDGKLKRYMKSEAIPESND-GPV 374

  Fly   370 KVLVSSNFESVALDKSKSVLVEFYAPWCGHCKQLAPIYDQLAEKYKDNEDIVIAKMDSTANELES 434
            ||:|:.||:.:..|.||.||:|||||||||||.|.|.|.:|.||..|:.:|||||||:|||::.|
 Frog   375 KVVVAENFDEIVNDDSKDVLIEFYAPWCGHCKNLEPKYKELGEKLGDDPNIVIAKMDATANDVPS 439

  Fly   435 -IKISSFPTIKYFRKEDNKVID--FNLDRTLDDFVKFLDANGEVADSEPVEETEEEEEAPKKDEL 496
             .::..|||| ||....:|...  :...|.:.||:.:|  ..|..:...|:|.|:.::..||:||
 Frog   440 QYEVRGFPTI-YFTPAGSKQKPKRYEGGREVSDFLSYL--KKEATNPPVVKEDEKPKKKKKKEEL 501

  Fly   497  496
             Frog   502  501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdiNP_001287070.1 ER_PDI_fam 27..474 CDD:273457 171/473 (36%)
pdi_dom 33..133 CDD:273454 47/100 (47%)
PDI_b_family 137..231 CDD:239279 33/102 (32%)
PDI_b'_family 244..347 CDD:239280 24/116 (21%)
PDI_a_PDI_a'_C 368..469 CDD:239293 51/103 (50%)
pdia3NP_989329.1 ER_PDI_fam 23..483 CDD:273457 172/477 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG53639
OrthoDB 1 1.010 - - D222522at33208
OrthoFinder 1 1.000 - - FOG0000292
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X241
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.930

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