DRSC/TRiP Functional Genomics Resources

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Protein Alignment Pdi and png-1

DIOPT Version :9

Sequence 1:NP_001287070.1 Gene:Pdi / 39651 FlyBaseID:FBgn0286818 Length:496 Species:Drosophila melanogaster
Sequence 2:NP_492913.1 Gene:png-1 / 173028 WormBaseID:WBGene00010160 Length:606 Species:Caenorhabditis elegans


Alignment Length:117 Identity:25/117 - (21%)
Similarity:55/117 - (47%) Gaps:9/117 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 NEFVLVEFYAPWCGHCKALAPEYAKAAQQLAEKESPIKLAKVDATVEGELAEQYAVRGYPTLKFF 108
            |..::::|:|.|||.|:.::|.:    :|.:.:.......||:..|..::.::|.:...||..|.
 Worm    22 NRLIIIDFFANWCGPCRMISPIF----EQFSAEYGNATFLKVNCDVARDIVQRYNISAMPTFIFL 82

  Fly   109 RSGSPVEYSGGRQAADIIAWVTKKTGPPAKDLTSVADA-----EQFLKDNEI 155
            ::...|:...|.....|...:.:...|...:..:.:|:     |||:|.:.:
 Worm    83 KNRQQVDMVRGANQQAIAEKIRQHYSPTPANPNAASDSEKRFLEQFVKCSNV 134

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PdiNP_001287070.1 ER_PDI_fam 27..474 CDD:273457 25/117 (21%)
pdi_dom 33..133 CDD:273454 19/88 (22%)
PDI_b_family 137..231 CDD:239279 5/24 (21%)
PDI_b'_family 244..347 CDD:239280
PDI_a_PDI_a'_C 368..469 CDD:239293
png-1NP_492913.1 TRX_family 20..103 CDD:239245 19/84 (23%)
Transglut_core 204..296 CDD:280085
YebA <235..312 CDD:224224
PAW 407..604 CDD:299187
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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