DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sstn and FRMD4A

DIOPT Version :9

Sequence 1:NP_648745.1 Gene:sstn / 39643 FlyBaseID:FBgn0036476 Length:635 Species:Drosophila melanogaster
Sequence 2:XP_006717520.1 Gene:FRMD4A / 55691 HGNCID:25491 Length:1110 Species:Homo sapiens


Alignment Length:586 Identity:120/586 - (20%)
Similarity:198/586 - (33%) Gaps:138/586 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   122 ARENSSILRRKQSTTSRESRDSQMTINNNNRQ---SETLSNRSSEYDNYQPSSSAGAGDMLVIGV 183
            ||.:..:|...|.:.|.:|....|.....:||   .|||..|..|........:...|.:.|  .
Human   424 ARRHCILLPGSQESDSSQSAKKDMLAALKSRQEALEETLRQRLEELKKLCLREAELTGKLPV--E 486

  Fly   184 AQQQAQQQPPLVKSAL---------KKRPTPTPSQMQYMRQQHQQQAHLAMNMNYQRSQPDVISM 239
            ......::||:|:..:         |..|....::::.:.::...|:.:........|.|:|   
Human   487 YPLDPGEEPPIVRRRIGTAFKLDEQKILPKGEEAELERLEREFAIQSQITEAARRLASDPNV--- 548

  Fly   240 YSANSSNVATLRQPPQVAPQQQPIIVQCDKYYLSPTHQSYNEGGFIKSSQNIKKYVSPMASPSNI 304
                |..:...|:...:...::          |.....:.||.. |||.:...:..|.:....||
Human   549 ----SKKLKKQRKTSYLNALKK----------LQEIENAINENR-IKSGKKPTQRASLIIDDGNI 598

  Fly   305 SYEQQQQRNPLHHQRQLDAISLAPSYVSVDMEAAQHQQQYRWRSQSHIAPLTPPQLGIIEVKSHS 369
            :.|..               ||:.:.|..|.::         :..|.|:||..|..|:       
Human   599 ASEDS---------------SLSDALVLEDEDS---------QVTSTISPLHSPHKGL------- 632

  Fly   370 SDMLAVPMPPS--RYPPHDEI----SLSSSSTTIEKKP-KPKQWLESSLDGP-AVIRQMDSQPHS 426
                 .|.|||  |.||...:    .:.......:|.| |||.|.|||||.| ..:::..|..||
Human   633 -----PPRPPSHNRPPPPQSLEGLRQMHYHRNDYDKSPIKPKMWSESSLDEPYEKVKKRSSHSHS 692

  Fly   427 PAGSSNGSSNPGAAAMVSSKPRAKLSSQSMSVAG-RHYSMSNQRP--------TPNYPSASYAVN 482
            .:.....|:...|.|...|.     |.|:..:.| .|::..:..|        :|:|..::.:|:
Human   693 SSHKRFPSTGSCAEAGGGSN-----SLQNSPIRGLPHWNSQSSMPSTPDLRVRSPHYVHSTRSVD 752

  Fly   483 TSSKALLS------QSTSYLNAMEQTLG--------------ISVSYPLEPLD------------ 515
            .|...|.|      ..:|.|.:..:.||              ...|...:|:|            
Human   753 ISPTRLHSLALHFRHRSSSLESQGKLLGSENDTGSPDFYTPRTRSSNGSDPMDDCSSCTSHSSSE 817

  Fly   516 --IPALRNL---------PPKPSQMQQPTPPPRPPPANQAHTQNQNLSHSGNGSSSGLAHGNAVQ 569
              .||..|.         |.|..|.|:..........:.:.....||:..|....:|.| |..|.
Human   818 HYYPAQMNANYSTLAEDSPSKARQRQRQRQRAAGALGSASSGSMPNLAARGGAGGAGGA-GGGVY 881

  Fly   570 TALVSPPVTVATASLSPEIRIESPKNMTVVQ--QATFQPYKEVTKPFEMSDFYKYSTKFKQK-EG 631
            ....|.|.:.......| :.||......||:  ::..:.:..|...|:.|:.|.....||:. .|
Human   882 LHSQSQPSSQYRIKEYP-LYIEGGATPVVVRSLESDQEGHYSVKAQFKTSNSYTAGGLFKESWRG 945

  Fly   632 G 632
            |
Human   946 G 946

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sstnNP_648745.1 None
FRMD4AXP_006717520.1 B41 54..269 CDD:214604
FERM_N 57..118 CDD:286467
FERM_M 140..269 CDD:278785
FERM_C_FRMD4A_FRMD4B 265..375 CDD:270012
DUF3338 429..551 CDD:288652 24/130 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3529
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.900

Return to query results.
Submit another query.