DRSC/TRiP Functional Genomics Resources

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Protein Alignment sstn and Rdx

DIOPT Version :10

Sequence 1:NP_648745.1 Gene:sstn / 39643 FlyBaseID:FBgn0036476 Length:635 Species:Drosophila melanogaster
Sequence 2:NP_001420682.1 Gene:Rdx / 315655 RGDID:1359472 Length:604 Species:Rattus norvegicus


Alignment Length:276 Identity:52/276 - (18%)
Similarity:98/276 - (35%) Gaps:70/276 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 HSSSSNNNKIEDDPKVR------KENLEARKQALEQRL---SEKSWLLQ-QIQKQETAIINGNYE 97
            |.......::|::.|.|      ||.:|..|:.|.:||   .|::...| ::::|....:....|
  Rat   314 HQKQLERAQLENEKKKREIAEKEKERIEREKEELMERLRQIEEQTMKAQKELEEQTRKALELEQE 378

  Fly    98 HMTVNE------------------FFVQLAQQYKHEQQLQA-LARENSSILRRKQSTTSRESR-- 141
            .....|                  ...|.|.|.|:::||.| ||...:.|...:::...:|..  
  Rat   379 RQRAKEEAERLDRERRAAEEAKSAIAKQAADQMKNQEQLAAELAEFTAKIALLEEAKKKKEEEAT 443

  Fly   142 -------DSQMTINNNNRQSETL----------------SNRSSEYDNYQPSSSAGAGDMLVIGV 183
                   .:|..:.....:.:|:                .|...|.|.:...:||   ::...||
  Rat   444 EWQHKAFAAQEDLEKTKEELKTVMCAPPPPPPPAVVPPTENEHDEQDEHSAEASA---ELSSEGV 505

  Fly   184 AQQQAQQQPPLVKSALKKRPTPTPSQMQYMRQQHQQQAHLAMNMN-YQRSQPDVI--SMYSANSS 245
            ...:::::          |.|.|....:..:|.....:.||...: .:::|.||:  ....|...
  Rat   506 TNHRSEEE----------RVTETQKNERVKKQLQALSSELAQARDETKKTQNDVLHAENVKAGRD 560

  Fly   246 NVATLRQPPQVAPQQQ 261
            ...||||..|...:|:
  Rat   561 KYKTLRQIRQGNTKQR 576

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sstnNP_648745.1 None
RdxNP_001420682.1 B41 7..206 CDD:214604
FERM_C_ERM 200..296 CDD:270015
ERM_helical 347..456 CDD:466641 20/108 (19%)
ERM_C 507..583 CDD:459932 16/80 (20%)
Blue background indicates that the domain is not in the aligned region.

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