DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment sstn and frmd4bb

DIOPT Version :9

Sequence 1:NP_648745.1 Gene:sstn / 39643 FlyBaseID:FBgn0036476 Length:635 Species:Drosophila melanogaster
Sequence 2:XP_009294836.1 Gene:frmd4bb / 100329900 ZFINID:ZDB-GENE-100921-74 Length:1053 Species:Danio rerio


Alignment Length:593 Identity:113/593 - (19%)
Similarity:190/593 - (32%) Gaps:200/593 - (33%)


- Green bases have known domain annotations that are detailed below.


  Fly    44 SSSSNNNKIEDDPKVRK-ENLEARKQALEQRLSEKSWLLQQIQKQETAIINGNYEHMTVNEFFVQ 107
            |:.|.::::.|:.|..| ..|..:::.::..||:|...|::|..:|.             |...:
Zfish   436 STGSADSEMNDEQKKEKLAELRKKERDIQDILSQKLTELKEICLREA-------------ELTGK 487

  Fly   108 LAQQYKHEQQLQALARENSSILRRKQSTTSRESRDSQMTINNNNRQSETLSNRSSEYDNYQPSSS 172
            |.::|      ..:..|....:||:..|..:  .|.....|    :...|.|..|.:        
Zfish   488 LPKEY------PLIKGETPPHVRRRVGTAFK--LDDLFPYN----EDPYLRNLESRF-------- 532

  Fly   173 AGAGDMLVIGVAQQQAQQQPPLVKSALKKRPTPTPSQMQYMRQQHQQQAHLAMNMNYQRSQPDVI 237
              |....::..|::.| .:|.:.|...|||.......||.:::..                 |.:
Zfish   533 --ALQQKIVEAAKKLA-AEPDISKLVRKKRRRNCLDAMQKLQEIE-----------------DEM 577

  Fly   238 SMYSANSSNVATLRQPPQVAPQ--QQPIIVQCDKYYLSPTHQSYNEGGFIKSSQNIK--KYVSPM 298
            :.|........|.|....:|.:  |......||...|..     ::||....|::::  ..:||.
Zfish   578 NQYRLKKGQKPTQRASVIIADELAQSECSSLCDSLPLDD-----DDGGQRPRSRSVQCSPCLSPP 637

  Fly   299 ASPSNISY--EQQQQRNPLHHQRQLD---------------------------AISLAP------ 328
            .|.|.:.:  |::...:..||.|.|:                           .:|..|      
Zfish   638 LSSSGLDFDPERRSSSSDTHHDRPLNRLDHEVQEPGHYYTPREVFSAQSSPCKTLSRMPKDPRSL 702

  Fly   329 ---------SYVSVDMEAAQHQQQYRWRSQSHIAPLTPPQLGIIEVK-----SHSSDMLAVPMPP 379
                     :|.|..:.:..|.:.:|.||            |.:|.:     ||.::....|:.|
Zfish   703 PQTPVLPRNAYSSSQLRSDGHIRAFRHRS------------GSLESQSQLFHSHCANKSVFPLSP 755

  Fly   380 SRYPPHDEISLSSSSTTIEKKPKPKQWLESSLD------GPAVIRQMDSQPHS------------ 426
            ||.....|:....||.|          ..||:|      .....|.:||..|.            
Zfish   756 SRRSNSTEVLDDCSSYT----------SMSSMDFCLPCSATPPYRTLDSHSHDYRLHRKVEIYGN 810

  Fly   427 --------PAGSSNGSSN---PGA-----AAMVSSKPRAKLSSQSMSVAGRHYSMSNQRPTPNYP 475
                    |..||:...|   |.|     .|....:|.:..:....|....||:::     |.||
Zfish   811 TGSMPNLVPQNSSSYQQNHYGPTAYYVAGYAGFDYEPCSNGAYVYESEIEGHYNIN-----PTYP 870

  Fly   476 SASYAVNTSSKALLSQSTSYLNAMEQTLGISVSYPLEPLDIPALRNLPPKPSQMQQPTPPPRPPP 540
            :..|                     |..|.:..|.:|.||     ||...|....:| |..|..|
Zfish   871 AHGY---------------------QGRGRNRHYGIEGLD-----NLSQNPYATVRP-PRGRQGP 908

  Fly   541 ANQAHTQN 548
            .|:..|:|
Zfish   909 LNEVLTKN 916

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
sstnNP_648745.1 None
frmd4bbXP_009294836.1 B41 88..287 CDD:214604
FERM_N 90..151 CDD:286467
FERM_M 173..287 CDD:278785
FERM_C_FRMD4A_FRMD4B 283..393 CDD:270012
DUF3338 427..553 CDD:288652 28/152 (18%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3529
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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