DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytbeta and Syt10

DIOPT Version :9

Sequence 1:NP_648734.1 Gene:Sytbeta / 39630 FlyBaseID:FBgn0261090 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_113854.1 Gene:Syt10 / 60567 RGDID:62041 Length:523 Species:Rattus norvegicus


Alignment Length:517 Identity:145/517 - (28%)
Similarity:224/517 - (43%) Gaps:91/517 - (17%)


- Green bases have known domain annotations that are detailed below.


  Fly   121 ECQPIQPASQLHGMHGGMGLNHHHMGT----------VSATGTDILRGPAEVFHSPLHLHHQSRS 175
            :|..|.||.: .|..||        ||          ||..|..:|.....||........:|:.
  Rat    33 KCSGIFPADR-SGQGGG--------GTDISVSLLAVVVSFCGLALLVVSLFVFWKLCWPCWKSKL 88

  Fly   176 FPPRLQRTPSISSQSSVDSAPS-------RHSGHRGSSPQIRTFGPDGRSS-----LPSE--PGF 226
            ..|.:...|     .|:.|||:       :........|..:...|..:.|     :|:|  ...
  Rat    89 VAPNVSTLP-----QSISSAPTEVFETEEKKEVEENEKPAPKAIEPAIKISHTSPDIPAEVQTAL 148

  Fly   227 PHHLARSPSPMRTISLDARCGSPAHSADPGDLRTPSPSQSSLASLAGGSGMGGSSAGKGVAGGRC 291
            ..||.:.....|..:      .|..|:.....|...|.|.:::|:....|               
  Rat   149 KEHLIKHARVQRQTT------DPTSSSRHNSFRRHLPRQMNVSSVDFSMG--------------- 192

  Fly   292 LSPLLIPPRSQPGVDPAMGPASPLGALQPDLYRMPDGPVYLTAPESSHAVGRLHLRVKYDYHLFD 356
            ..|:|     |.|     ...:.:|.::|:||:...........:.....|:|:..::|||....
  Rat   193 TEPVL-----QRG-----ETRTSIGRIKPELYKQKSVDSEGNRKDDVKTCGKLNFALQYDYENEL 247

  Fly   357 LTVHLIEAHNLSPIEEGGFRDPYVRLMLQPEVDSRKRQTHIHRGESNPYFDQHFKFPVSRDQLQG 421
            |.|.:|:|.:|...:..|..||||::.|.|: ..:|.||.:||...||.||:.|:|||..|||..
  Rat   248 LVVKIIKALDLPAKDFTGTSDPYVKIYLLPD-RKKKFQTRVHRKTLNPLFDELFQFPVVYDQLSN 311

  Fly   422 KELILQVLDYDRYSHNDIIGEVRISVDGL----DLSKSVEIWGDLLRTKKPKEDRPELLCSLNYL 482
            ::|...:.|:||:|.:|:||||  .:|.|    |||:...:|.|:........|..|::.||.||
  Rat   312 RKLHFSIYDFDRFSRHDMIGEV--ILDNLFEVSDLSREATVWKDIHCATTESIDLGEIMFSLCYL 374

  Fly   483 PQAERLTVVIMKARNLDTL-----QEPYVKIYLIQNGKRIKKKKTSITKSDDPTNPIWNEAFTFN 542
            |.|.|:|:.::|.|||..:     .:||||:.|:..|:|:||:||:..|  :..||::|||..|:
  Rat   375 PTAGRMTLTVIKCRNLKAMDITGSSDPYVKVSLMCEGRRLKKRKTTTKK--NTLNPVYNEAIIFD 437

  Fly   543 LQSNYLHNAAIEIYV-----VGAGSEATEIGCCGLGPQESGTGCQHWHDMINNARKPTAMWH 599
            :....:...::.|.|     ||...   .||.|..|....|.|..||::|:...|||...||
  Rat   438 IPPENVDQVSLCIAVMDYDRVGHNE---VIGVCRTGLDAEGLGRDHWNEMLAYHRKPITHWH 496

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytbetaNP_648734.1 C2 341..463 CDD:301316 50/125 (40%)
C2B_Synaptotagmin 473..601 CDD:175975 49/137 (36%)
Syt10NP_113854.1 Cysteine motif. /evidence=ECO:0000250|UniProtKB:O35681 13..35 0/1 (0%)
C2A_Synaptotagmin-1-5-6-9-10 231..356 CDD:176031 50/127 (39%)
C2B_Synaptotagmin-3-5-6-9-10 365..498 CDD:176048 49/137 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.780

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