DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sytbeta and Sytl3

DIOPT Version :9

Sequence 1:NP_648734.1 Gene:Sytbeta / 39630 FlyBaseID:FBgn0261090 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_006227950.1 Gene:Sytl3 / 499017 RGDID:1561992 Length:609 Species:Rattus norvegicus


Alignment Length:492 Identity:102/492 - (20%)
Similarity:179/492 - (36%) Gaps:114/492 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   177 PPRLQRTPSISSQSSVDSAPSR--HSGHRGSSPQIRTFGPDGRSSLPSEPGFPHHLARSPSPMRT 239
            ||    ||...|:|....:|:|  ..||      .|.|.....:...|.......|::|.:.|.:
  Rat   156 PP----TPPPLSESQCGGSPNRLQELGH------FRGFNKSVENLFLSVTTQMRKLSKSQNDMTS 210

  Fly   240 ----ISLDAR-CGSPAHSADPGDLRTPSPSQSSLASLAGGSGMGGSSAGKGVAGGRCLSPLLIPP 299
                :::|.| |..          .|...|||..|              ..|...:..:|.::..
  Rat   211 EKHLLAMDPRQCMG----------HTERRSQSDTA--------------VNVTSRKTSTPDILKA 251

  Fly   300 RSQPGVDPAMGPASPLGALQPDLYRMPDGPVYLTA----------------------PESSHAVG 342
            ..|.  || ..|.||:  |:.|  ..|..|.:.|.                      .::::..|
  Rat   252 FHQE--DP-RHPPSPV--LKQD--TPPSSPTHSTVFSGGLRHGSLISVNSTCTEMGNFDNANVTG 309

  Fly   343 RLHLRVKYDYHLFDLTVHLIEAHNLSPIEEGGFR-DPYVRLMLQPEVDSR-KRQTHIHRGESNPY 405
            .:...:.|..:...|.:.:....||:..|:...: :|||:..|.|:..|: ||:|.:.:...:|.
  Rat   310 EIEFAIHYCVNSHSLEICIKTCKNLAYGEDKRRKCNPYVKTYLLPDRSSQGKRKTRVQKNTLDPT 374

  Fly   406 FDQHFKFPVSRDQLQGKELILQVLDYDRYSHNDIIGEVRISVDGLDLSKSV---EIWGDL-LRTK 466
            |::..|:.|...||..:.|.:.|......:....:|||.:.:...|...|.   ..|..| .:.:
  Rat   375 FEETLKYQVDPAQLATRRLQVSVWHLGTLARRVFLGEVILPLATWDFEGSAAQNARWYPLRAKAE 439

  Fly   467 KPKEDRPE------------LLCSLNYLPQAE--------RLTVVIMKARNL----DTLQEPYVK 507
            |.:|:.|:            |......|.:|:        :|.:|::.|:||    |.....:||
  Rat   440 KYEENIPQTNGELAVRAKLVLPVGPRMLQEAQEDQLALNGQLCLVVLGAKNLPVRSDGTLNSFVK 504

  Fly   508 IYLIQNGKRIKKKKTSITKSDDPTNPIWNEAFTFN-LQSNYLHNAAIEIYV---VGAGSEATEIG 568
            ..|....::..:.|:.:.|..  ..|.|..:|.|| :.|:.|..:.:|:.|   ...|.....:|
  Rat   505 GCLTLPDQQKLRVKSPVLKKQ--ACPQWKHSFVFNGVSSSQLRQSTLELTVWDQAMFGMNDRLLG 567

  Fly   569 CCGLGPQESGTGCQ--------HWHDMINNARKPTAM 597
            ...||.:....||.        .|..::::....|.|
  Rat   568 EAKLGSKGGAPGCTDSCSQSKLQWQKVLSSPNLWTDM 604

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytbetaNP_648734.1 C2 341..463 CDD:301316 30/127 (24%)
C2B_Synaptotagmin 473..601 CDD:175975 33/161 (20%)
Sytl3XP_006227950.1 PHD_SF 14..123 CDD:419867
FYVE_like_SF 60..108 CDD:333710
C2 308..435 CDD:417471 29/126 (23%)
C2B_SLP_1-2-3-4 449..609 CDD:175987 32/158 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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