DRSC/TRiP Functional Genomics Resources

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Protein Alignment Sytbeta and Syt2

DIOPT Version :9

Sequence 1:NP_648734.1 Gene:Sytbeta / 39630 FlyBaseID:FBgn0261090 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_038946276.1 Gene:Syt2 / 24805 RGDID:3804 Length:499 Species:Rattus norvegicus


Alignment Length:537 Identity:147/537 - (27%)
Similarity:235/537 - (43%) Gaps:130/537 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   140 LNHHHMGTVSATGTDILRGPAEVFHSPLHLHHQSRSFP---PRLQRTPSISSQ-----------S 190
            :.|.|..|.:.|.|          |:..|.|.|| |.|   |.|....|:.::           |
  Rat     6 ITHTHTHTHTHTHT----------HTHTHTHTQS-SLPVSGPELDFCLSVQNRRERGRCCRRGWS 59

  Fly   191 SVDSAPSRHSGHRGSSPQIRTFGPDGR----------SSLPSEPGFPHHLARSPSPMRTISLDAR 245
            .:|....|.:|....|..:|......:          :::|..|..|              :|..
  Rat    60 KLDPLERRWAGPAVPSATMRNIFKRNQEPIVAPATTTATMPLAPAAP--------------VDNS 110

  Fly   246 CGSPAHSADPGDL-------------RTPSPSQS--SLASLAG---------------------- 273
            ..|........|:             :.|.|..:  ::|.:||                      
  Rat   111 TESTGTGESQEDMFAKLKDKFFNEINKIPLPPWALIAMAVVAGLLLLTCCFCICKKCCCKKKKNK 175

  Fly   274 ---GSGMGGSSAGKGVAGGRCLSPLLIPPRSQPGVDPAMGPASPLGALQPDLYRMPDGPVYLTAP 335
               |.||..:...|.:.||            |...|...|.....|..:.:           ..|
  Rat   176 KEKGKGMKNAMNMKDMKGG------------QDDDDAETGLTEGEGEGEEE-----------KEP 217

  Fly   336 ESSHAVGRLHLRVKYDYHLFDLTVHLIEAHNLSPIEEGGFRDPYVRLMLQPEVDSRKRQTHIHRG 400
            |:   :|:|...:.||:....|||.:::|..|..::.||..||||::.|.|: ..:|.:|.:||.
  Rat   218 EN---LGKLQFSLDYDFQANQLTVGVLQAAELPALDMGGTSDPYVKVFLLPD-KKKKYETKVHRK 278

  Fly   401 ESNPYFDQHFKFPVSRDQLQGKELILQVLDYDRYSHNDIIGEVRISVDGLDLSKSVEIWGDLLRT 465
            ..||.|::.|.|.|...:|.||.|::.:.|:||:|.:||||||::.::.:||.:.:|.|.||...
  Rat   279 TLNPAFNETFTFKVPYQELGGKTLVMAIYDFDRFSKHDIIGEVKVPMNTVDLGQPIEEWRDLQGG 343

  Fly   466 KKPKEDRPELLC-SLNYLPQAERLTVVIMKARNLDT-----LQEPYVKIYLIQNGKRIKKKKTSI 524
            :|.:.::...:| ||.|:|.|.:|||.|::|:||..     |.:|||||:|:|||||:|||||::
  Rat   344 EKEEPEKLGDICTSLRYVPTAGKLTVCILEAKNLKKMDVGGLSDPYVKIHLMQNGKRLKKKKTTV 408

  Fly   525 TKSDDPTNPIWNEAFTFNLQSNYLHNAAIEIYVVG----AGSEATEIGCCGLGPQESGTGCQHWH 585
            .|.  ..||.:||:|:|.:....:....:.:.|:.    ..:||  ||...:|...:||..:||.
  Rat   409 KKK--TLNPYFNESFSFEIPFEQIQKVQVVVTVLDYDKLGKNEA--IGKIFVGSNATGTELRHWS 469

  Fly   586 DMINNARKPTAMWHYIR 602
            ||:.|.|:|.|.||.::
  Rat   470 DMLANPRRPIAQWHSLK 486

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytbetaNP_648734.1 C2 341..463 CDD:301316 46/121 (38%)
C2B_Synaptotagmin 473..601 CDD:175975 55/137 (40%)
Syt2XP_038946276.1 Syt2_N 81..193 CDD:409249 15/125 (12%)
C2A_Synaptotagmin-1-5-6-9-10 219..341 CDD:176031 46/125 (37%)
C2B_Synaptotagmin-1 351..486 CDD:176047 55/138 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.820

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