DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytbeta and Syt3

DIOPT Version :9

Sequence 1:NP_648734.1 Gene:Sytbeta / 39630 FlyBaseID:FBgn0261090 Length:602 Species:Drosophila melanogaster
Sequence 2:NP_001107588.1 Gene:Syt3 / 20981 MGIID:99665 Length:587 Species:Mus musculus


Alignment Length:534 Identity:160/534 - (29%)
Similarity:228/534 - (42%) Gaps:127/534 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 IQPASQLHGMHGGMGLNHHHMGTVSATGTDILRGPAEVFHSPLHLHHQSRSFPPRLQ-------- 181
            :.|...|.|:.||.|   ||:| .|..|..:|.||        |.|..:...||..:        
Mouse   101 LAPGVGLAGLVGGGG---HHLG-ASLGGHPLLGGP--------HHHGHTAHHPPFAELLEPGGLG 153

  Fly   182 -RTPSISSQSSVDSAPSR------HSGHRGS--SPQIRTFGPDGRSSL---PSEPGFP----HHL 230
             ..|...|...:||.|..      .:|.:.|  ||::.:.|..|...|   ||..|.|    |..
Mouse   154 GSEPPEPSYLDMDSYPEAAVASVVAAGVKPSQTSPELPSEGGTGSGLLLLPPSGGGLPSAQSHQQ 218

  Fly   231 ARS----------PSPM--RTISLDARCGSPAHSADPGDLRTPSPSQSSLASLAG--------GS 275
            ..|          |.|:  :|::..|   .|:....|..|..|.|.....|.|.|        |:
Mouse   219 VTSLAPTTRYPALPRPLTQQTLTTQA---DPSTEERPPALPLPLPGGEEKAKLIGQIKPELYQGT 280

  Fly   276 GMGG-SSAGKGVAGGRCLSPLLIPPRSQPGVDPAMGPASPLGALQPDLYRMPDGPVYLTAPESSH 339
            |.|| ...|.|.||..|                                                
Mouse   281 GPGGRRGGGSGEAGAPC------------------------------------------------ 297

  Fly   340 AVGRLHLRVKYDYHLFDLTVHLIEAHNLSPIEEGGFRDPYVRLMLQPEVDSRKRQTHIHRGESNP 404
              ||:...::|.|....|.|.:::|.:|...:..||.||||::.|.|: ..:|.||.:||...||
Mouse   298 --GRISFALRYLYGSDQLVVRILQALDLPAKDSNGFSDPYVKIYLLPD-RKKKFQTKVHRKTLNP 359

  Fly   405 YFDQHFKFPVSRDQLQGKELILQVLDYDRYSHNDIIGEVRISVDGLDLSKSV---EIWGDLLRTK 466
            .|::.|:|.|...:|..::|...|.|:||:|.:|:||:|.:. :.|:|::..   .:|.|:|...
Mouse   360 IFNETFQFSVPLAELAQRKLHFSVYDFDRFSRHDLIGQVVLD-NLLELAEQPPDRPLWRDILEGG 423

  Fly   467 KPKEDRPELLCSLNYLPQAERLTVVIMKARNLDTL-----QEPYVKIYLIQNGKRIKKKKTSITK 526
            ..|.|..||..||.|||.|.||||.|:||.||..:     .:||||..||..|:|:||:||||.|
Mouse   424 SEKADLGELNFSLCYLPTAGRLTVTIIKASNLKAMDLTGFSDPYVKASLISEGRRLKKRKTSIKK 488

  Fly   527 SDDPTNPIWNEAFTFNLQSNYLHNAAIEIYVVG---AGSEATEIGCCGLGPQESGT-GCQHWHDM 587
              :..||.:|||..|::....:.|..:.|.||.   .|.... ||.|.:||:.:.. |.:||.:|
Mouse   489 --NTLNPTYNEALVFDVAPESVENVGLSIAVVDYDCIGHNEV-IGVCRVGPEAADPHGREHWAEM 550

  Fly   588 INNARKPTAMWHYI 601
            :.|.|||...||.:
Mouse   551 LANPRKPVEHWHQL 564

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytbetaNP_648734.1 C2 341..463 CDD:301316 42/124 (34%)
C2B_Synaptotagmin 473..601 CDD:175975 58/136 (43%)
Syt3NP_001107588.1 Cysteine motif. /evidence=ECO:0000269|PubMed:10531343 10..34
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 183..258 19/77 (25%)
C2A_Synaptotagmin-1-5-6-9-10 297..421 CDD:176031 43/175 (25%)
C2B_Synaptotagmin-3-5-6-9-10 430..564 CDD:176048 58/136 (43%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
54.780

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