DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Sytbeta and syt3

DIOPT Version :9

Sequence 1:NP_648734.1 Gene:Sytbeta / 39630 FlyBaseID:FBgn0261090 Length:602 Species:Drosophila melanogaster
Sequence 2:XP_005164031.1 Gene:syt3 / 100000615 ZFINID:ZDB-GENE-090601-1 Length:566 Species:Danio rerio


Alignment Length:624 Identity:161/624 - (25%)
Similarity:243/624 - (38%) Gaps:197/624 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 CWLAHKRIESWSRMAKERVGAVRRVTLDRNSADEG-TPSGSGASSTAGGNGVSVVHILPIGEGST 72
            |||      .|    :::.|....:|       .| .|.|:|.....||.|.|::          
Zfish    79 CWL------PW----RDKEGGGLSLT-------SGLLPGGAGLGGVGGGGGASLL---------- 116

  Fly    73 TPPPQPMTPPPSASSVTSTTSGIGSVSAGSVSDSCDLPTDSEEVAIAKECQPIQPASQLHGMHGG 137
             ||........|:||:..|.|..|                          |.....|.:.|:.||
Zfish   117 -PPLLQRKDTHSSSSLYPTLSQQG--------------------------QHHPHFSDVMGVEGG 154

  Fly   138 MGLNHHHMGTVSATGTDILRGPAEV-FHSPLHLHHQSRSFPP-----RLQRT-----PSISSQSS 191
            .||         ..| .::.||.|: .||.|.:.    |:|.     :|.:|     |:....|:
Zfish   155 GGL---------VVG-GVVGGPQEMQEHSYLDMD----SYPNNAATLKLSQTSPELPPATEGGSA 205

  Fly   192 VDSAPSRHSGHRGSSPQIRTFGPDGRSSLPSEPGFPHHLARSPSPMRTISLDARCGSPAHSADPG 256
            ....|:.|     |..|:.|                     .|.||            .|.....
Zfish   206 AKDLPNAH-----SQQQVTT---------------------RPKPM------------THQLSSP 232

  Fly   257 DLRTPSPSQSSLASLAGGSGMGGSSAGKGVAGGRCLSPLLIPPRSQPGVDPAMGPASPLGALQPD 321
            |......|:.                                             .:.:|.::|:
Zfish   233 DFHGEEKSEQ---------------------------------------------LTSIGQIKPE 252

  Fly   322 LYRM-----PDGPVYLTAPESSHAVGRLHLRVKYDYHLFDLTVHLIEAHNLSPIEEGGFRDPYVR 381
            |||:     .||       :..:..|::...::|.::...|.|.:::|.:|...:..||.||||:
Zfish   253 LYRLRQGDQGDG-------KQGNNCGKISFLLRYAFNTEQLVVKILKALDLPAKDANGFSDPYVK 310

  Fly   382 LMLQPEVDSRKRQTHIHRGESNPYFDQHFKFPVSRDQLQGKELILQVLDYDRYSHNDIIGEVRIS 446
            :.|.|: ..:|.||.:||...||.|::.|:|.|...:|..::|...|.|:||:|.:|:||:|  .
Zfish   311 IYLLPD-RKKKFQTKVHRKTLNPVFNETFQFGVPLAELHARKLHFSVYDFDRFSRHDLIGQV--V 372

  Fly   447 VDG-LDLSKSV---EIWGDLLRTKKPKEDRPELLCSLNYLPQAERLTVVIMKARNLDTL-----Q 502
            ||. ||.|:..   .||.|::.....|.|..||..||.|||.|.||||.|:||.||..:     .
Zfish   373 VDNLLDFSEGTGEKPIWRDIVEGTAEKADLGELNFSLCYLPTAGRLTVTIIKATNLKAMDLTGFS 437

  Fly   503 EPYVKIYLIQNGKRIKKKKTSITKSDDPTNPIWNEAFTFNLQSNYLHNAAIEIYV-----VGAGS 562
            :||||..|:..|:|:||:||||.|  :..||.:|||..|::.:..:.:.::.|.|     :|...
Zfish   438 DPYVKASLVCEGRRLKKRKTSIKK--NTLNPTYNEALVFDIPNENIESVSLIIAVMDYDCIGHNE 500

  Fly   563 EATEIGCCGLGPQESGTGCQHWHDMINNARKPTAMWHYI 601
               .||.|.:|....|.|.:||..|:.|.|||...||.:
Zfish   501 ---VIGMCRMGSDADGPGREHWTAMLANPRKPIEHWHQL 536

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
SytbetaNP_648734.1 C2 341..463 CDD:301316 44/125 (35%)
C2B_Synaptotagmin 473..601 CDD:175975 55/137 (40%)
syt3XP_005164031.1 C2A_Synaptotagmin-1-5-6-9-10 269..394 CDD:176031 44/127 (35%)
C2B_Synaptotagmin-3-5-6-9-10 403..536 CDD:176048 55/137 (40%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1028
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D925064at2759
OrthoFinder 1 1.000 - - FOG0000025
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
54.780

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