DRSC/TRiP Functional Genomics Resources

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Protein Alignment Prosbeta2 and Psma3

DIOPT Version :9

Sequence 1:NP_524076.2 Gene:Prosbeta2 / 39628 FlyBaseID:FBgn0023174 Length:272 Species:Drosophila melanogaster
Sequence 2:NP_035314.3 Gene:Psma3 / 19167 MGIID:104883 Length:255 Species:Mus musculus


Alignment Length:171 Identity:36/171 - (21%)
Similarity:63/171 - (36%) Gaps:20/171 - (11%)


- Green bases have known domain annotations that are detailed below.


  Fly    37 KTGTTIVGIIYKDGVILGADTRATEGPIVSDKNCAKIHYLAKNIYCCGAGTAADTEMTTDLISSQ 101
            :..:|.:||..||||:.|.: :.....:..:.:..::..:.:::....||..||.....|:...:
Mouse    32 ENSSTAIGIRCKDGVVFGVE-KLVLSKLYEEGSNKRLFNVDRHVGMAVAGLLADARSLADIAREE 95

  Fly   102 LELHRLQ----------TDREVRVVAANTMLKQMLFRYQGHISAALVLGGVD-KTGPHIYSIHPH 155
            ....|..          .||....|.|.|     |:........:.:||... ..|..:|.|.|.
Mouse    96 ASNFRSNFGYNIPLKHLADRVAMYVHAYT-----LYSAVRPFGCSFMLGSYSANDGAQLYMIDPS 155

  Fly   156 GSSDKLPYATMGSGSLAAMTVFESRWKPDLSEEEGKKLVRD 196
            |.|.......:|....||.|..|   |..:.|...:.:|::
Mouse   156 GVSYGYWGCAIGKARQAAKTEIE---KLQMKEMTCRDVVKE 193

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Prosbeta2NP_524076.2 PRE1 42..232 CDD:223711 35/166 (21%)
proteasome_beta_type_7 42..228 CDD:239732 35/166 (21%)
Pr_beta_C 232..264 CDD:289249
Psma3NP_035314.3 proteasome_alpha_type_3 5..217 CDD:239720 36/171 (21%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0638
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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