DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment mRpL39 and mrpl39

DIOPT Version :10

Sequence 1:NP_524075.2 Gene:mRpL39 / 39627 FlyBaseID:FBgn0036462 Length:333 Species:Drosophila melanogaster
Sequence 2:NP_001011362.1 Gene:mrpl39 / 496829 XenbaseID:XB-GENE-953160 Length:331 Species:Xenopus tropicalis


Alignment Length:326 Identity:124/326 - (38%)
Similarity:190/326 - (58%) Gaps:26/326 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 CALRQL--QQYRTKANFSGSSASLAK-RNDLFNQEQRRQRDAVGRIDKIEVRYLGLPEDVTL-VM 73
            ||.|..  :.|.|......|:|.::| ..:|||:|:.||.....||:||||:::|..:...: :|
 Frog     9 CAARVACGRFYSTAPAARLSTADISKMHTELFNKEKERQLSLHPRIEKIEVKHVGKRDHGAVGLM 73

  Fly    74 NGNISTPFNCAQHLSEGHCKRSALALIDGSVPWDMHRPLQESCTLQLLNFHVSEPHVVNKAFWRT 138
            |...|||::||.||||.:|.||.|||:||.| |||::||.:||.:|.|.|...:|..||||:||:
 Frog    74 NKGQSTPYHCALHLSEWYCSRSVLALVDGEV-WDMYKPLTKSCNIQFLTFKDEDPEEVNKAYWRS 137

  Fly   139 CSFMLGAALNRAFKPEANLQLHSFPGPNIKSGSFVHDIVLQTQ--NWEPGKEEMRALSAEMVKLA 201
            |:.:||..|..|||.|..:.|...|...:.||:|.:|:||.::  :|.|.:|.:|:|:.|...|.
 Frog   138 CAMILGCVLENAFKEEYMVNLIRAPEIPVISGAFCYDVVLDSRLDDWRPTEENLRSLTREAHSLI 202

  Fly   202 AQDLRIERLDVQQDLAQEMFKDSKYK---SEQLPSISQQTNGRVTLYRLGDHIDISRGPMVASTS 263
            .:||..|.|:|::.:|:|:|:.|.||   :|:  ..||...|.||::|.||.:|::.||.:..||
 Frog   203 HKDLPFESLEVEEKVAKEIFQHSPYKLIMAEE--KASQNPQGLVTVHRFGDFVDLTEGPHIPRTS 265

  Fly   264 FLGKCVISAAHKVAEEGPSGAFYRIQGVALPSGFQLNHVAFGVLEERSKK-------------PS 315
            |..:..::|.|.:|.. ||....|.||::||...:.:|..:..|..||::             ||
 Frog   266 FCQQYEVTAGHSLANI-PSEHVRRFQGLSLPWHLKAHHTVWNRLRTRSQRLVTEEHNQEPEQPPS 329

  Fly   316 P 316
            |
 Frog   330 P 330

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
mRpL39NP_524075.2 PLN02908 31..>265 CDD:178496 100/240 (42%)
mrpl39NP_001011362.1 PLN02908 38..>323 CDD:178496 113/288 (39%)

Return to query results.
Submit another query.