DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG5114 and AT5G08390

DIOPT Version :9

Sequence 1:NP_001246760.1 Gene:CG5114 / 39624 FlyBaseID:FBgn0036460 Length:445 Species:Drosophila melanogaster
Sequence 2:NP_568194.2 Gene:AT5G08390 / 830737 AraportID:AT5G08390 Length:839 Species:Arabidopsis thaliana


Alignment Length:359 Identity:81/359 - (22%)
Similarity:123/359 - (34%) Gaps:118/359 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    81 TFKKHTAPVFACSLHPNYNWAVTGSEDDRAFVWETSTGDVLYEITEHKDTVTETHFSHDGVYLAT 145
            |:|.||..|......|:..|.|:|.||:...||:.:.|.:|:|...|:..:....|......|||
plant   138 TYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEFKSHEGKIQSLDFHPHEFLLAT 202

  Fly   146 GDLAGDLFVFKVSEKHDERPILTKIWEYSMSDMSWLFWHRAAHILLAGSDSGEVFVFRI----PS 206
            |.                            :|.:..||......|: ||...|....|.    |.
plant   203 GS----------------------------ADKTVKFWDLETFELI-GSGGTETTGVRCLTFNPD 238

  Fly   207 GE---C------KILPGQSSRCESGELSG----------DGKKLFTAYVNGSVKLWDLKSCQVLI 252
            |:   |      ||...:..||..|...|          :||.|..:|....|.:|       ::
plant   239 GKSVLCGLQESLKIFSWEPIRCHDGVDVGWSNLSDMNVHEGKLLGCSYNQNCVGVW-------VV 296

  Fly   253 DVNESHPMGFGEITHAVVACERES-PFYVCAEASGECSSGKGIRYNTS----------------- 299
            |::.:.||..|       |.:..| |    .:.||......|:..|:|                 
plant   297 DLSRTEPMSGG-------ATQSNSHP----EKTSGSGRDQAGLNDNSSKVILGKLPGSQKVDPLL 350

  Fly   300 FHNKTIRKMLFCTNNGPV-----STIQS--EHGIECLAFAP----------SSADLK----LFAC 343
            ...|::.|:....|:.|:     ||.:|  ....:.|...|          ||..:|    |.:.
plant   351 KETKSLGKLSVSQNSDPLPKDTKSTGRSSVSQSSDPLVKEPKPLGRFSATHSSDTVKESRTLSST 415

  Fly   344 GSLDG---RISIWDYAKSA--LRTICENPVPNDA 372
            ||:..   |:::....|||  :.|:    |||.|
plant   416 GSVSDSPHRVTLTSAPKSASGISTV----VPNAA 445

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG5114NP_001246760.1 WD40 79..439 CDD:295369 81/359 (23%)
WD40 <81..441 CDD:225201 81/359 (23%)
WD40 repeat 89..126 CDD:293791 12/36 (33%)
WD40 repeat 132..170 CDD:293791 5/37 (14%)
WD40 repeat 175..213 CDD:293791 13/50 (26%)
WD40 repeat 220..299 CDD:293791 19/89 (21%)
WD40 repeat 266..321 CDD:293791 14/77 (18%)
WD40 repeat 326..365 CDD:293791 13/57 (23%)
WD40 repeat 373..408 CDD:293791 81/359 (23%)
WD40 repeat 414..438 CDD:293791
AT5G08390NP_568194.2 WD40 9..261 CDD:238121 36/151 (24%)
WD40 repeat 63..99 CDD:293791
WD40 repeat 104..140 CDD:293791 1/1 (100%)
WD40 repeat 147..182 CDD:293791 11/34 (32%)
WD40 repeat 188..222 CDD:293791 9/62 (15%)
Katanin_con80 680..831 CDD:404758
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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