DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG3349 and pccb-1

DIOPT Version :10

Sequence 1:NP_648730.2 Gene:CG3349 / 39623 FlyBaseID:FBgn0036459 Length:766 Species:Drosophila melanogaster
Sequence 2:NP_741743.1 Gene:pccb-1 / 180596 WormBaseID:WBGene00018701 Length:536 Species:Caenorhabditis elegans


Alignment Length:156 Identity:35/156 - (22%)
Similarity:50/156 - (32%) Gaps:46/156 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 LVAAVKTSVVAQTTPSNAKVN-----AAFQIFHGDIDKYELCVKL-------------IRVCRKV 75
            :|.||....|.|.....||.:     .|...|..|:|......:|             ||.....
 Worm   226 VVKAVTNEEVTQEELGGAKTHTVTSGVAHGAFDNDVDALMSLRELFNYLPLSNTDAAPIRAAEDP 290

  Fly    76 WDQAPDYSDSEEKTPDENEVNGEDMAEYKRGDCIPTGLSKDGERLFWKIVAKWQKEIDDRFLIQN 140
            ||:|....|:        .|..|..|.|...|.: ..|..:|:  |::|:..:.|.:        
 Worm   291 WDRAVPSLDT--------VVPLESTAAYNMKDVV-HALVDEGD--FFEIMPDYAKNL-------- 336

  Fly   141 LFVVIMTTENGR-------NTKLTFG 159
              |:.....|||       |.|...|
 Worm   337 --VIGFARMNGRTVGIVGNNPKFAAG 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3349NP_648730.2 PRK03918 349..>766 CDD:235175
pccb-1NP_741743.1 MmdA 36..534 CDD:443827 35/156 (22%)
Blue background indicates that the domain is not in the aligned region.

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