DRSC/TRiP Functional Genomics Resources

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Protein Alignment DCX-EMAP and Dcx

DIOPT Version :10

Sequence 1:NP_001261850.1 Gene:DCX-EMAP / 39617 FlyBaseID:FBgn0259099 Length:1118 Species:Drosophila melanogaster
Sequence 2:XP_006257444.1 Gene:Dcx / 84394 RGDID:620670 Length:366 Species:Rattus norvegicus


Alignment Length:341 Identity:94/341 - (27%)
Similarity:149/341 - (43%) Gaps:68/341 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   105 YWQQRNGATTGATSGRQSRAISPGYLDNMSENSEQPPVVPLVRSKSRPEISSAAASRYNNLSYWK 169
            ::.:|:.|:......|.:...||.:..:.|          ..|:::...:|:..          |
  Rat     7 HFDERDKASRNMRGSRMNGLPSPTHSAHCS----------FYRTRTLQALSNEK----------K 51

  Fly   170 ARRVVFYRNGDPFFPGVEL-----RYRPGRDVTSLDNLL----DKISPKMDLPRGARYVFSMDGD 225
            |::|.||||||.:|.|:..     |:|      |.|.||    ..:|..::||:|.||::::||.
  Rat    52 AKKVRFYRNGDRYFKGIVYAVSSDRFR------SFDALLADLTRSLSDNINLPQGVRYIYTIDGS 110

  Fly   226 RKY-HLDELEDGAFYVVSSFKAFKPASYGKKNGMWYASPGNQGWGSKPASRKPSI-MEADLGTLS 288
            ||. .:||||:|..||.||...||...|.|.        .|..|.   .:.|.|. |:|.....|
  Rat   111 RKIGSMDELEEGESYVCSSDNFFKKVEYTKN--------VNPNWS---VNVKTSANMKAPQSLAS 164

  Fly   289 TTSGSIKRSAG----RVIRII-NNLDHSVQCRVLLNLRTSQPFEEVLEDLGQVLKING--AKKMY 346
            :.|...:.:..    :::.|| :.:......|||||.:|:..||:||.|:.:.:|:..  .||:|
  Rat   165 SNSAQARENKDFVRPKLVTIIRSGVKPRKAVRVLLNKKTAHSFEQVLTDITEAIKLETGVVKKLY 229

  Fly   347 TGTGQEVRSFSQLRNEFADVDTFYLATGTA---------LIAGSPIRRSRSRPSVVAAAPILPTD 402
            |..|::|   :.|.:.|.|.|.| :|.|..         .:..:..|..:..||..|.....||.
  Rat   230 TLDGKQV---TCLHDFFGDDDVF-IACGPEKFRYAQDDFSLDENECRVMKGNPSATAGPKASPTP 290

  Fly   403 ELPKVPLRGARPRSKS 418
            :.......|...||||
  Rat   291 QKTSAKSPGPMRRSKS 306

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCX-EMAPNP_001261850.1 DCX 166..253 CDD:214711 38/96 (40%)
DCX2_RP_like 300..372 CDD:340590 25/74 (34%)
HELP 449..515 CDD:460922
WD40 520..562 CDD:459801
WD40 repeat 530..573 CDD:293791
WD40 548..959 CDD:441893
WD40 repeat 582..624 CDD:293791
WD40 repeat 627..664 CDD:293791
WD40 repeat 673..712 CDD:293791
WD40 repeat 718..801 CDD:293791
WD40 repeat 806..838 CDD:293791
WD40 repeat 846..880 CDD:293791
WD40 847..>1073 CDD:475233
WD40 repeat 886..918 CDD:293791
WD40 repeat 931..969 CDD:293791
WD40 repeat 1002..1037 CDD:293791
DcxXP_006257444.1 DCX1_DCX 51..139 CDD:340529 38/93 (41%)
DCX2 176..259 CDD:340589 27/86 (31%)
KLF8_12_N <284..>343 CDD:424081 7/23 (30%)
Blue background indicates that the domain is not in the aligned region.

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