DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DCX-EMAP and Eml4

DIOPT Version :10

Sequence 1:NP_001261850.1 Gene:DCX-EMAP / 39617 FlyBaseID:FBgn0259099 Length:1118 Species:Drosophila melanogaster
Sequence 2:XP_006525218.1 Gene:Eml4 / 78798 MGIID:1926048 Length:999 Species:Mus musculus


Alignment Length:870 Identity:265/870 - (30%)
Similarity:410/870 - (47%) Gaps:119/870 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly   270 SKPASRKPSIMEADLGTLSTTSGSIKRSAGRVIRIINNLDHSVQCRVLLNLRTSQPFEEVLEDLG 334
            |.|:..:||:.||...:..|....|.|..          :|:....:...           |.|.
Mouse    76 SMPSKGQPSLREAISMSCITNGSGISRKQ----------NHTSSVSIARK-----------ETLS 119

  Fly   335 QVLKINGAKKMYTGTGQEVRSFSQLRNEFADVDTFYLATGTALIAGSPIRRSRSRPSVVAAAPIL 399
            ...|....||.....||..:......|   |......|:.:...:..|::.:|..|...::|||.
Mouse   120 SAAKSGTEKKKEKPQGQREKKEDSHSN---DQSPQIRASPSPQPSSQPLQINRQTPESKSSAPIK 181

  Fly   400 -----PTDE---------------------LPKVPLRGARPRSKSRPRILYAPESEILRPN---G 435
                 ||.|                     ..|:..:..:...|.:..|:...:......|   |
Mouse   182 SIKRPPTAEKSHNSWENSDDSRNKLMKTVSTSKLISKVIKNADKHKDVIVNQAKMSTREKNSQEG 246

  Fly   436 EYTMLDIMKEEPTKVTIRGLRRTFYPPVHHAPADN------SPPDKKLQLQWVHGYRGIDARRNL 494
            ||          .|:.:||...|.:.|   :..||      ..|.:||:|:||:||||.|.|.|:
Mouse   247 EY----------IKMFMRGRPITMFIP---SDVDNYDDIRTELPPEKLKLEWVYGYRGKDCRANV 298

  Fly   495 WVLPSGELLYYVAAVAVLFDRDEDAQRHYTGHTEDIMCMDVHPSRELVASGQKAGRD---RKSQA 556
            ::||:||::|::|:|.|||:.:|..||||.|||:.:.|:.|||.:..:|:||.||.|   |..|.
Mouse   299 YLLPTGEIVYFIASVVVLFNYEERTQRHYLGHTDCVRCLAVHPDKIRIATGQIAGVDKDGRPLQP 363

  Fly   557 HVRIWSTESLQTLYVFGMGELDSGVTAVAFSQLNGGSYILAVDSGRESILSVWQWQWGHLLGKVA 621
            |||:|.:.||.||:|.|:|..:.||..:.||:.:.|.::..:|...|.:|:||.||....:.::.
Mouse   364 HVRVWDSVSLTTLHVIGLGTFERGVGCLDFSKADSGVHLCVIDDSNEHMLTVWDWQKKSKIAEIK 428

  Fly   622 TLQEGLSGAAFHPLDDNLIITHGRGHLAFWH------RRKDGFFERTDIVKQPSRSHVTSVQFEP 680
            |..|.:....|||.|.|.|||.|:.|:.||.      .||.|.|.:.:..|     .|..:.|..
Mouse   429 TTNEVVLAVEFHPTDANTIITCGKSHIFFWTWSGNSLTRKQGIFGKYEKPK-----FVQCLAFLG 488

  Fly   681 DGDVITADSDGFITIYS---------VDSDGAYFVRTEFEAHNKGIGCLIMLGEGTLLSGGEKDR 736
            :|||:|.||.|.:.|:|         ....|.|.:..:.:||:..:..|..:..|.||:||.|||
Mouse   489 NGDVLTGDSGGVMLIWSKTMVEPPPGKGPKGVYQINRQIKAHDGSVFTLCQMRNGMLLTGGGKDR 553

  Fly   737 KIAAWDSLQNYKKIADTKLPEAAGGVRTIYPQRPGRNDGNIYVGTTRNNILEGSLQRRFTQVVFG 801
            ||..||...|.::  :.::|:..|.:|.:   ..||.: ...|||:||.||.|:....|...|.|
Mouse   554 KIILWDHDLNLER--EIEVPDQYGTIRAV---AEGRAE-QFLVGTSRNFILRGTFNDGFQIEVQG 612

  Fly   802 HGRQLWGLAAHPDDELYATAGHDKHVALWR--KNKLIWT--IQTGYECVALAFHPFGTLAA-GST 861
            |..:|||||.||..:|..|...|:.|.:|.  :::|.||  :.....|.  .|||.||:.| |:.
Mouse   613 HTDELWGLATHPFKDLLLTCAQDRQVCMWNSVEHRLEWTRLVDEPGHCA--DFHPSGTVVAIGTH 675

  Fly   862 EGHLLVINCENGAVMLTLRVCGS-PLNCVAYNQVGDMIAMGSQNGSIYLFRVSRDGFSYKKVNKI 925
            .|...|::.|. ..::::...|: .|:.:.|:..|.::|:||.:..|||:.|..:|..|.:..|.
Mouse   676 SGRWFVLDAET-RDLVSIHTDGNEQLSVMRYSVDGTLLAVGSHDNFIYLYTVLENGRKYSRYGKC 739

  Fly   926 RG-SQPLTHLDWSMDGNFVQTVTIDFDLLFWDAKS---LSPERSPIAMKDVKWLTNNCTVGFLVA 986
            .| |..:||||||.|...:.:.:.|:::|:||.::   |...||.  .||:.|.|..|.:||.|.
Mouse   740 TGHSSYITHLDWSPDNKHIMSNSGDYEILYWDIENGCKLIRNRSD--CKDIDWTTYTCVLGFQVF 802

  Fly   987 GQWSNRYYSTTNTIVATCSRSAAHDMLASGDAEGYLRLFRYPCISPRAEFHESKVYSGMLACVRF 1051
            |.|..   .:..|.:....||....::|..|....:.||:|||...:|..|:...:|..:..|.|
Mouse   803 GVWPE---GSDGTDINALVRSHNRRVIAVADDFCKVHLFQYPCSKAKAPSHKYSAHSSHVTNVSF 864

  Fly  1052 LCGDHTLITVGGTDASLMVWDIVEE 1076
            ...|..||:.||.|.|::.|.:||:
Mouse   865 THNDSHLISTGGKDMSIIQWKLVEK 889

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCX-EMAPNP_001261850.1 DCX 166..253 CDD:214711
DCX2_RP_like 300..372 CDD:340590 10/71 (14%)
HELP 449..515 CDD:460922 30/71 (42%)
WD40 520..562 CDD:459801 22/44 (50%)
WD40 repeat 530..573 CDD:293791 21/45 (47%)
WD40 548..959 CDD:441893 146/435 (34%)
WD40 repeat 582..624 CDD:293791 11/41 (27%)
WD40 repeat 627..664 CDD:293791 16/42 (38%)
WD40 repeat 673..712 CDD:293791 13/47 (28%)
WD40 repeat 718..801 CDD:293791 29/82 (35%)
WD40 repeat 806..838 CDD:293791 13/33 (39%)
WD40 repeat 846..880 CDD:293791 10/34 (29%)
WD40 847..>1073 CDD:475233 73/231 (32%)
WD40 repeat 886..918 CDD:293791 11/31 (35%)
WD40 repeat 931..969 CDD:293791 14/40 (35%)
WD40 repeat 1002..1037 CDD:293791 10/34 (29%)
Eml4XP_006525218.1 TD_EMAP4 20..75 CDD:409271
HELP 250..318 CDD:460922 29/70 (41%)
WD40 325..678 CDD:475233 129/365 (35%)
WD40 repeat 335..383 CDD:293791 22/47 (47%)
WD40 repeat 388..428 CDD:293791 11/39 (28%)
WD40 repeat 435..472 CDD:293791 15/36 (42%)
WD40 repeat 481..529 CDD:293791 13/47 (28%)
WD40 525..885 CDD:475233 121/373 (32%)
WD40 repeat 535..572 CDD:293791 14/38 (37%)
WD40 repeat 577..612 CDD:293791 13/38 (34%)
WD40 repeat 618..655 CDD:293791 14/36 (39%)
WD40 repeat 660..695 CDD:293791 11/37 (30%)
WD40 repeat 701..741 CDD:293791 12/39 (31%)
WD40 repeat 746..781 CDD:293791 12/34 (35%)
WD40 repeat 814..851 CDD:293791 10/36 (28%)
WD40 repeat 859..886 CDD:293791 10/26 (38%)
Blue background indicates that the domain is not in the aligned region.

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