DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DCX-EMAP and eml2

DIOPT Version :10

Sequence 1:NP_001261850.1 Gene:DCX-EMAP / 39617 FlyBaseID:FBgn0259099 Length:1118 Species:Drosophila melanogaster
Sequence 2:NP_001025406.1 Gene:eml2 / 569375 ZFINID:ZDB-GENE-050706-71 Length:805 Species:Danio rerio


Alignment Length:834 Identity:282/834 - (33%)
Similarity:427/834 - (51%) Gaps:81/834 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly   282 ADLGTLSTTSGSIKR-------SAGRVIRIINNLDHSVQCRVLLNLRTSQPFEEVLED----LGQ 335
            |..|.|..|:..:.|       |||..:.:.:.|.|..| ||.|.....|..:..|.|    ||.
Zfish     6 ASCGNLYDTNTLLLRYCNDDNVSAGGGMEMDDRLSHLEQ-RVQLQEDEIQLLKAALADALRRLGC 69

  Fly   336 VLKINGAKKMYTGTGQEVRSFSQ------LRNEFADVDTFYLATGTALIAGSPIRRSRSRPSVVA 394
            ..:|..|....:|. .:||...|      |.|.:..         |..::|.|...|..:..|:.
Zfish    70 CEEITQASNKKSGP-TKVRQILQALPSKPLTNGYVQ---------TKRLSGFPSSPSSPKKEVLM 124

  Fly   395 A--APILPTDELPKVPLRGARPRSKSRPRILYAPESEILRPNGEYTMLDIMKEEP-TKVTIRGLR 456
            :  ...:.|:.|..|    .:..:.||.|...:..|...:.:.:........:|. .::.:||  
Zfish   125 SIKRKSMSTERLSTV----KKEMADSRSRTTSSSSSTCGKRDSKTKECSFNADEGYVRMFLRG-- 183

  Fly   457 RTFYPPVHHAP----------ADNSPPDKKLQLQWVHGYRGIDARRNLWVLPSGELLYYVAAVAV 511
               .|...|.|          :..:.|::||:||||:||||.|.|.||::||:||::|:.|:|.|
Zfish   184 ---RPITTHIPDQLRDSYSLESKVALPERKLKLQWVYGYRGRDCRSNLYLLPTGEIVYFNASVVV 245

  Fly   512 LFDRDEDAQRHYTGHTEDIMCMDVHPSRELVASGQKAGRDRKSQA---HVRIWSTESLQTLYVFG 573
            |::.:|..||||.||.:|:.|:.:||....:|:||.||..:..:|   |||:|.:.||.||:|.|
Zfish   246 LYNVEEQQQRHYLGHNDDVKCLAIHPDMVTIATGQVAGTSKDGKALPPHVRVWDSVSLNTLHVIG 310

  Fly   574 MGELDSGVTAVAFSQLNGGSYILAVDSGRESILSVWQWQWGHLLGKVATLQEGLSGAAFHPLDDN 638
            .|..|..||.||||:.|||:::.|||...:.|||||.||....|.:|....:.:.||.|||::.|
Zfish   311 AGVFDRAVTCVAFSKSNGGAHLCAVDDANDHILSVWDWQKEKQLAEVKCSNDSVLGAVFHPMEAN 375

  Fly   639 LIITHGRGHLAFWH------RRKDGFFERTDIVKQPSRSHVTSVQFEPDGDVITADSDGFITIYS 697
            ||:|.|:.|:.||.      .::.|.||     |.....:|..:.|..:||.||.||.|.|.|::
Zfish   376 LIVTCGKSHINFWTVEGSTLTKRQGLFE-----KHEKPKYVLCIAFAENGDAITGDSSGNIYIWA 435

  Fly   698 VDSDGAYFVRTEFEAHNKGIGCLIMLGEGTLLSGGEKDRKIAAWDSLQNYKKIADTKLPEAAGGV 762
              ..|....:....||..||..|.:|.:|||:|||.||||:..||  .:|:|.::.::|||.|.|
Zfish   436 --KGGNRISKVVSGAHEGGIFSLCVLKDGTLVSGGGKDRKVLLWD--HDYRKKSEMEVPEAFGPV 496

  Fly   763 RTIYPQRPGRNDGNIYVGTTRNNILEGSLQRRFTQVVFGHGRQLWGLAAHPDDELYATAGHDKHV 827
            ||:   ..|:.| .::||||:|.:|.||.....|.:|.||..:||||..||..|.:.|.|.||.|
Zfish   497 RTL---AEGKQD-ELFVGTTKNAVLRGSFSGSLTPIVQGHTDELWGLDVHPSTEQFVTCGQDKQV 557

  Fly   828 ALWR--KNKLIWTIQTGYECVALAFHPFGT-LAAGSTEGHLLVINCENGAVMLTLRVCGSP-LNC 888
            .||.  .:..:||........::.|||.|| :|.|:.....||::.:. ..::::...|:. ::.
Zfish   558 CLWDTCSHLPLWTKAIEDPARSVGFHPSGTVVAVGTMTAKWLVLDTDT-RDLVSMHTDGNEIISV 621

  Fly   889 VAYNQVGDMIAMGSQNGSIYLFRVSRDGFSYKKVNKIRG-SQPLTHLDWSMDGNFVQTVTIDFDL 952
            |.|:..|..:|:||.:..:|::.|:.:|..|.:|.|..| |..:||||||.|..|:.|.:.|:::
Zfish   622 VKYSPDGAYLAVGSHDNFVYIYSVTENGKKYSRVGKCTGHSSFVTHLDWSTDSQFIVTNSGDYEI 686

  Fly   953 LFWDAKSLSPERSPIAMKDVKWLTNNCTVGFLVAGQWSNRYYSTTNTIVATCSRSAAHDMLASGD 1017
            |:|:|.|.....:...:::::|.|:.|.:||.|.|.|.:....|  .|.|.| ||...::|||.|
Zfish   687 LYWEASSGKHITNNDIVRNLEWATSTCVLGFSVFGIWPDGADGT--DINAVC-RSHDKNLLASAD 748

  Fly  1018 AEGYLRLFRYPCISPRAEFHESKVYSGMLACVRFLCGDHTLITVGGTDASLMVW 1071
            ..|.:.||..||..|||..|....:|..:..|.||..|..||:.||.|.|::.|
Zfish   749 DFGKVHLFSNPCSQPRAPSHIYGGHSSHVTNVAFLHDDSHLISTGGKDTSILQW 802

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCX-EMAPNP_001261850.1 DCX 166..253 CDD:214711
DCX2_RP_like 300..372 CDD:340590 19/81 (23%)
HELP 449..515 CDD:460922 29/75 (39%)
WD40 520..562 CDD:459801 19/44 (43%)
WD40 repeat 530..573 CDD:293791 18/45 (40%)
WD40 548..959 CDD:441893 159/424 (38%)
WD40 repeat 582..624 CDD:293791 20/41 (49%)
WD40 repeat 627..664 CDD:293791 16/42 (38%)
WD40 repeat 673..712 CDD:293791 12/38 (32%)
WD40 repeat 718..801 CDD:293791 35/82 (43%)
WD40 repeat 806..838 CDD:293791 14/33 (42%)
WD40 repeat 846..880 CDD:293791 9/34 (26%)
WD40 847..>1073 CDD:475233 77/228 (34%)
WD40 repeat 886..918 CDD:293791 9/31 (29%)
WD40 repeat 931..969 CDD:293791 14/37 (38%)
WD40 repeat 1002..1037 CDD:293791 16/34 (47%)
eml2NP_001025406.1 TD_EMAP2 33..80 CDD:409269 13/47 (28%)
HELP 178..249 CDD:460922 29/75 (39%)
WD40 252..299 CDD:459801 19/46 (41%)
WD40 repeat 264..310 CDD:293791 18/45 (40%)
WD40 repeat 319..358 CDD:293791 19/38 (50%)
WD40 334..802 CDD:441893 174/484 (36%)
WD40 repeat 367..404 CDD:293791 15/41 (37%)
WD40 repeat 412..448 CDD:293791 11/37 (30%)
WD40 repeat 453..518 CDD:293791 31/70 (44%)
WD40 repeat 537..572 CDD:293791 15/34 (44%)
WD40 repeat 579..614 CDD:293791 9/35 (26%)
WD40 repeat 619..659 CDD:293791 12/39 (31%)
WD40 repeat 665..689 CDD:293791 11/23 (48%)
WD40 repeat 732..769 CDD:293791 17/37 (46%)
Blue background indicates that the domain is not in the aligned region.

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