DRSC/TRiP Functional Genomics Resources

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Protein Alignment DCX-EMAP and CG34124

DIOPT Version :10

Sequence 1:NP_001261850.1 Gene:DCX-EMAP / 39617 FlyBaseID:FBgn0259099 Length:1118 Species:Drosophila melanogaster
Sequence 2:NP_001036333.1 Gene:CG34124 / 4379887 FlyBaseID:FBgn0083960 Length:2003 Species:Drosophila melanogaster


Alignment Length:565 Identity:107/565 - (18%)
Similarity:194/565 - (34%) Gaps:168/565 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   483 HGYRGIDARR--NL-------WVLPSGELLYYVAAVAVLFDRDE-DAQRHYTGHTEDIMCMDVHP 537
            |.: |.|.::  ||       .|..||..|.|.:     ..|.| ..|....|.....:..:.||
  Fly    33 HSF-GYDCKKLFNLVLVDSDTLVFASGNFLNYFS-----ISRQEISFQETVYGCGVGFITKNEHP 91

  Fly   538 S-RELVASGQKAGRDRKSQAHVRIWSTESLQTLYVFGMGELDSGVTAVAFSQ--LNGGSY----- 594
            . ..|...|:...|                .|::::....|:..|..:..:|  ...|||     
  Fly    92 DYTNLFTVGENGAR----------------PTVFIYEYPSLNVRVKLLNAAQNCFTAGSYNKTGE 140

  Fly   595 ILAVDSG-RESILSVWQWQWGHLLGKVATLQEGLSGAAFHPLDDNLIITHGRGHLAFWHRRKD-- 656
            :.|..:| .:.|:::|:|:...::.:..:.|..:....|...:..|:.:.|..|:.||.....  
  Fly   141 LFASQAGYPDFIITIWRWENAEVVLRAKSFQSDILFVHFSEHNPILLCSSGLSHIKFWKMANTFT 205

  Fly   657 --------GFFERTDIVKQPSRSHVTSVQFEPDGDVITADSDGFITIYSVDSDGAYFVRTEF--- 710
                    |.|.:||.      |.:.::....|.:||:....|.:.::.     |..::.|.   
  Fly   206 GLKLKGDLGRFGKTDF------SDIYAMYMLQDENVISGSDWGNMLLWQ-----AGLIKFEICRK 259

  Fly   711 ---EAHNKGIGCLIML-GEGTLLSGGEKDRKIAAW-------------------DSLQNYKKIAD 752
               ..|.|.|..:.|. ||.|.:.   .|..:..|                   |.:..: ||||
  Fly   260 GRKPCHTKPITRITMKNGEVTTVG---MDGYVRVWYWETVDLADPPEDDLFVEIDPIYEF-KIAD 320

  Fly   753 TKL------------------PEAAGG-----VRTI-YPQRPGRNDGNIYVGTTRNNILEGSLQR 793
            .:|                  .:..||     :.|. .||:|.:    :|      :.:.|.:..
  Fly   321 VELRCMQKIHPFDESDFTHYAQDGNGGIWFCDINTYDVPQKPRK----LY------SCIGGKVLA 375

  Fly   794 RFTQVVFGHGRQLWGLAAHPDDELYATAGHDKHVALWRK-----NKLIWTIQTGYECVALAFHPF 853
            .....|..|     .|......:|:.....::.:.|.::     ..:|| :.|.....       
  Fly   376 AQMSPVSPH-----FLCMSESGKLFVYQYDEQRLILEKEFPAEGVDVIW-LDTNISVK------- 427

  Fly   854 GT-LAAGSTEGHL--LVINCENGAVMLTLRVCG-----SPLNCVAYNQVGDMIAMGSQNGSIYLF 910
            || |.|...:|.|  :.::..||......||..     ||:..:..::...::..||.:.||:::
  Fly   428 GTELVAAFKDGILRQMYLDLSNGERPKMTRVRAFKAHTSPITALTVSRNSSLLLTGSADKSIFIY 492

  Fly   911 RVSRDGFSYKKVNKIRGSQPLTHLDWSMDGNFVQTVTIDFDLLFW 955
            ::|||  .::.|:    .:||         .|||...|. :..:|
  Fly   493 QLSRD--EHQMVD----MRPL---------GFVQFAAIP-NCFYW 521

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCX-EMAPNP_001261850.1 DCX 166..253 CDD:214711
DCX2_RP_like 300..372 CDD:340590
HELP 449..515 CDD:460922 10/40 (25%)
WD40 520..562 CDD:459801 7/42 (17%)
WD40 repeat 530..573 CDD:293791 6/43 (14%)
WD40 548..959 CDD:441893 89/489 (18%)
WD40 repeat 582..624 CDD:293791 9/49 (18%)
WD40 repeat 627..664 CDD:293791 9/46 (20%)
WD40 repeat 673..712 CDD:293791 6/44 (14%)
WD40 repeat 718..801 CDD:293791 21/126 (17%)
WD40 repeat 806..838 CDD:293791 4/36 (11%)
WD40 repeat 846..880 CDD:293791 8/36 (22%)
WD40 847..>1073 CDD:475233 27/117 (23%)
WD40 repeat 886..918 CDD:293791 7/31 (23%)
WD40 repeat 931..969 CDD:293791 6/25 (24%)
WD40 repeat 1002..1037 CDD:293791
CG34124NP_001036333.1 WD40 repeat 90..124 CDD:293791 8/49 (16%)
WD40 repeat 131..166 CDD:293791 8/34 (24%)
WD40 135..493 CDD:475233 71/395 (18%)
WD40 repeat 174..217 CDD:293791 7/42 (17%)
WD40 repeat 270..318 CDD:293791 7/51 (14%)
WD40 repeat 323..370 CDD:293791 8/56 (14%)
WD40 repeat 414..462 CDD:293791 13/55 (24%)
WD40 repeat 468..511 CDD:293791 11/57 (19%)
SMC_N <1435..>1631 CDD:481474
Blue background indicates that the domain is not in the aligned region.

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