DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DCX-EMAP and CG10064

DIOPT Version :10

Sequence 1:NP_001261850.1 Gene:DCX-EMAP / 39617 FlyBaseID:FBgn0259099 Length:1118 Species:Drosophila melanogaster
Sequence 2:NP_648065.1 Gene:CG10064 / 38761 FlyBaseID:FBgn0035724 Length:742 Species:Drosophila melanogaster


Alignment Length:732 Identity:139/732 - (18%)
Similarity:245/732 - (33%) Gaps:250/732 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly   499 SGELLYYVAAVAVLFDRDEDAQRHYTGHTEDIMCMDVHPSRELVASGQKAGRDRKSQAHVRIWST 563
            :|.:::.:.....:.|..::.|....|||..|.|:|:..|.:.:||||.  .....:.:|.||:.
  Fly    33 TGSIIFALGNKIGIADYKKNTQEFVAGHTNTISCLDLSKSGKYMASGQI--NHMGFRGYVIIWNY 95

  Fly   564 ESLQTLYVFGMGELDSGVTAVAFSQLN------GGSYILAVDSG------RESILSVWQWQWGHL 616
            :..:.:....:.::  .|.|:.|:..:      ||     ||.|      .|:...:.|      
  Fly    96 DQRKEIARHDLHKV--SVQAICFTAQDRCVVSIGG-----VDDGSVIVFDMEAFSPICQ------ 147

  Fly   617 LGKVATLQEGLSGAAF--HPLDDN--LIITHGRGHLAFWHRRKDGFFERTDIVKQPSRSHVTSVQ 677
                ......:||.|.  .||.:|  ..:|.|..||..|           .|:::..:.:|..|.
  Fly   148 ----TPASRAISGNALTVRPLHNNPYFFVTAGDRHLRLW-----------SILREEKKLYVQDVL 197

  Fly   678 FEP----------------------DGDVITADSDGFITIYSVDSD------------GAYFVRT 708
            ...                      .||::.      |.:...|.|            ||     
  Fly   198 MASKTRVFYCARINKTDEFAYLGTGTGDIVK------IVLNCCDRDHVSKQGSTSCILGA----- 251

  Fly   709 EFEAHN-------------KGIGCLIMLGEGTLLSG-GEKDRKIA-----------------AWD 742
             |..||             .|:..|.:|..|.||.| |..|.::.                 .|.
  Fly   252 -FGTHNPRKPTGRDCNRYVNGVRALYVLEGGRLLIGAGNGDIELVEERTDVPLINFRDYPGPTWP 315

  Fly   743 SLQNYKKIADTKLPEAAGGVRTIYPQRPGRNDGNIYVGTTRNNILEGSLQRRFTQVVFGHGRQLW 807
            .|:..||      ...:|.:.:....:...    .|:.|..|.|             :|...:.|
  Fly   316 YLRTLKK------THVSGRISSFVRSKTDM----FYICTDTNEI-------------YGLNIKTW 357

  Fly   808 GL----AAHPD-----------DELYATAGHDKHVALW---RKNKLIWTIQTGYECVALAFHPFG 854
            .|    ..|..           ..::||:|.: .:.:|   ||.:|:..:...:.|..:.|...|
  Fly   358 VLKLLRTCHTKSVYCITFPKNYSGVFATSGKE-CIRIWSSGRKQELLRIMVYNFNCACVRFTHDG 421

  Fly   855 T-LAAGSTEGHLLVINCENGAVMLTL-----RVCGSPLNCVAYNQVGDMIAMGSQNGSIYLFRVS 913
            | :.:...:|.:.......|.::..:     :.|    :.:|....|.:|..|...|.:.:::: 
  Fly   422 TSIVSVWNDGIIRAFTPITGRLIYAIPNAHNKGC----SALAVASSGRLIVTGGIEGQVRVWKI- 481

  Fly   914 RDGFSYKKVNKIRG-SQPLTHLDWSMDGNFVQTVTI----DFDLLFWDAKSLSPERSPIAMKDVK 973
             |.:....|..::. |.|:|    |:|.|::.|..|    |...:.||.|.::       .|.| 
  Fly   482 -DPYRQDLVGVLKDHSGPIT----SLDINYLDTEVISACTDGSCVIWDIKRMT-------RKQV- 533

  Fly   974 WLTNNCTVGFLVAGQWSNRYYSTTNTIVATC----------------------SRSAAHDMLASG 1016
             :|.|.        |:.:..|..|...|.||                      |:.::.:.||..
  Fly   534 -VTANT--------QFMSASYFPTGVQVITCGSDGRIIYWMVYNGALIRELTASKKSSVNCLAIN 589

  Fly  1017 DAEGY---------LRLFRY---PCISPRAEFHESKVYSGMLACVRFLCGDHTLITVGGTDASLM 1069
            :...|         ::|:.|   ..:...:| |.|.|    ::|....|  .|:...|.||.||:
  Fly   590 ETGDYFITVGSDLQVKLWDYNSGAVVGIGSE-HASSV----ISCAYSPC--MTMFVTGSTDGSLI 647

  Fly  1070 VWDIVEEXLKW----PP 1082
            :||:..:   |    ||
  Fly   648 IWDVPRDF--WGRPNPP 662

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCX-EMAPNP_001261850.1 DCX 166..253 CDD:214711
DCX2_RP_like 300..372 CDD:340590
HELP 449..515 CDD:460922 1/15 (7%)
WD40 520..562 CDD:459801 14/41 (34%)
WD40 repeat 530..573 CDD:293791 11/42 (26%)
WD40 548..959 CDD:441893 91/520 (18%)
WD40 repeat 582..624 CDD:293791 9/53 (17%)
WD40 repeat 627..664 CDD:293791 11/40 (28%)
WD40 repeat 673..712 CDD:293791 10/72 (14%)
WD40 repeat 718..801 CDD:293791 17/100 (17%)
WD40 repeat 806..838 CDD:293791 10/49 (20%)
WD40 repeat 846..880 CDD:293791 5/39 (13%)
WD40 847..>1073 CDD:475233 54/270 (20%)
WD40 repeat 886..918 CDD:293791 6/31 (19%)
WD40 repeat 931..969 CDD:293791 10/41 (24%)
WD40 repeat 1002..1037 CDD:293791 9/68 (13%)
CG10064NP_648065.1 WD40 <59..482 CDD:441893 89/494 (18%)
WD40 repeat 65..106 CDD:293791 10/42 (24%)
WD40 repeat 111..151 CDD:293791 10/54 (19%)
WD40 repeat 159..186 CDD:293791 9/37 (24%)
WD40 366..650 CDD:238121 62/318 (19%)
WD40 repeat 370..407 CDD:293791 7/37 (19%)
WD40 repeat 412..449 CDD:293791 6/36 (17%)
WD40 repeat 456..494 CDD:293791 7/39 (18%)
WD40 repeat 499..535 CDD:293791 12/48 (25%)
WD40 repeat 541..576 CDD:293791 5/34 (15%)
WD40 repeat 583..617 CDD:293791 5/33 (15%)
WD40 repeat 625..651 CDD:293791 10/31 (32%)
Blue background indicates that the domain is not in the aligned region.

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