DRSC/TRiP Functional Genomics Resources

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Protein Alignment DCX-EMAP and Eml1

DIOPT Version :10

Sequence 1:NP_001261850.1 Gene:DCX-EMAP / 39617 FlyBaseID:FBgn0259099 Length:1118 Species:Drosophila melanogaster
Sequence 2:XP_038968474.1 Gene:Eml1 / 362783 RGDID:1306374 Length:831 Species:Rattus norvegicus


Alignment Length:823 Identity:279/823 - (33%)
Similarity:414/823 - (50%) Gaps:119/823 - (14%)


- Green bases have known domain annotations that are detailed below.


  Fly   275 RKPSIMEADLGTLSTTSGSIKRSAGRVIRIINNLDHSVQCRVLLNLRTSQPFEEVLEDLGQVLKI 339
            :|||      .:|.:.|||.|.....|.:.||              |||.. |.|..        
  Rat   105 KKPS------ASLPSPSGSRKEMVVPVTKSIN--------------RTSSS-ERVSP-------- 140

  Fly   340 NGAKKMYTGTGQEVRSFSQLRNEFADVDTFYLATGTALIAGSPIRRSRSRPSVVAAAPILPTDEL 404
             |.::..:|..:..|:                .||:...:.|..:.|.|:|.....:|.|.:   
  Rat   141 -GGRRESSGDSKGSRN----------------RTGSTSSSSSGKKNSESKPKEPTFSPALQS--- 185

  Fly   405 PKVPLRGARPRSKSRPRILYAPESEILRPNGEYTMLDIMKEEPTKVTIRGLRRTFYPP-----VH 464
                     |:.:.:.|:.::.|                 |...|:.:||...|.|.|     .:
  Rat   186 ---------PKPQGKRRVTHSKE-----------------EGYVKMFLRGRPVTMYMPKDQVDSY 224

  Fly   465 HAPADNSPPDKKLQLQWVHGYRGIDARRNLWVLPSGELLYYVAAVAVLFDRDEDAQRHYTGHTED 529
            ...|....|.|:|:|:||:||||.|.|.||::||:||.:|::|:|.||::.:|..||||.||.:|
  Rat   225 SLEAKAELPTKRLKLEWVYGYRGRDCRNNLYLLPTGETVYFIASVVVLYNVEEQLQRHYAGHNDD 289

  Fly   530 IMCMDVHPSRELVASGQKAGRDRKSQ---AHVRIWSTESLQTLYVFGMGELDSGVTAVAFSQLNG 591
            :.|:.|||.|..:|:||.||..:..:   .|||||.:.:|.||:|.|:|..|..||.:|||:.||
  Rat   290 VKCLAVHPDRITIATGQVAGTSKDGKQLPPHVRIWDSVTLNTLHVIGIGFFDRAVTCIAFSKSNG 354

  Fly   592 GSYILAVDSGRESILSVWQWQWGHLLGKVATLQEGLSGAAFHPLDDNLIITHGRGHLAFWH---- 652
            ||::.|||...:.:||||.||....|..|....|.:..|.|||.|.|:|:|.|:.||.||.    
  Rat   355 GSHLCAVDDSNDHVLSVWDWQREERLADVKCSNEAVFAADFHPTDTNIIVTCGKSHLYFWTLEGN 419

  Fly   653 --RRKDGFFERTDIVKQPSRSHVTSVQFEPDGDVITADSDGFITIYSVDSDG-AYFVRTEFEAHN 714
              .:|.|.||     ||.....|..|.|..:||.||.||.|.|.::...::. :|.|:   .||.
  Rat   420 SLNKKQGLFE-----KQEKPKFVLCVTFSENGDTITGDSSGNILVWGKGTNRISYAVQ---GAHE 476

  Fly   715 KGIGCLIMLGEGTLLSGGEKDRKIAAWDSLQNYKKIADTKLPEAAGGVRTIYPQRPGRNDGN-IY 778
            .||..|.||.:|||:|||.|||::.:|:.  ||:|:...::||..|.:||:     ....|| |.
  Rat   477 GGIFALCMLRDGTLVSGGGKDRRLISWNG--NYQKLHKAEIPEQFGPIRTV-----AEGKGNVIL 534

  Fly   779 VGTTRNNILEGSLQRRFTQVVFGHGRQLWGLAAHPDDELYATAGHDKHVALWRK--NKLIWTIQT 841
            :|||||.:|:|:|...||.:..||..:|||||.|.....:.|.|||||..||..  ::.:|....
  Rat   535 IGTTRNFVLQGTLTGDFTPITQGHTDELWGLAIHASKPQFLTCGHDKHATLWDAVGHRPVWDKII 599

  Fly   842 GYECVALAFHPFGT-LAAGSTEGHLLVINCENGAVMLTLRVCGS-PLNCVAYNQVGDMIAMGSQN 904
            .....:..|||.|: :|.|:..|...|.:.|. ..::|:...|: .|:.:.|:..|:.:|:||.:
  Rat   600 EDPAQSSGFHPSGSVVAVGTLTGRWFVFDTET-KDLVTVHTDGNEQLSVMRYSPDGNFLAIGSHD 663

  Fly   905 GSIYLFRVSRDGFSYKKVNKIRG-SQPLTHLDWSMDGNFVQTVTIDFDLLFWDAKSLSPERSPIA 968
            ..||::.||.:|..|.:|.|..| |..:||||||::..|:.:.:.|:::|:|...:.....|...
  Rat   664 NCIYIYGVSDNGRKYTRVGKCSGHSSFITHLDWSVNSQFLVSNSGDYEILYWVPSACKQVVSVET 728

  Fly   969 MKDVKWLTNNCTVGFLVAGQWSNRYYSTTNTIVATCSRSAAHD--MLASGDAEGYLRLFRYPCIS 1031
            .:|::|.|..||:||.|.|.|...  |....|.|.|   .||:  :|::||..|.:.||.|||..
  Rat   729 TRDIEWATYTCTLGFHVFGVWPEG--SDGTDINAVC---RAHEKKLLSTGDDFGKVHLFSYPCSQ 788

  Fly  1032 PRAEFHESKVYSGMLACVRFLCGDHTLITVGGTDASLMVWDIV 1074
            .||..|....:|..:..|.|||.|..||:.||.|.|:|.|.::
  Rat   789 FRAPSHIYSGHSSHVTNVDFLCEDSHLISTGGKDTSIMQWRVI 831

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCX-EMAPNP_001261850.1 DCX 166..253 CDD:214711
DCX2_RP_like 300..372 CDD:340590 11/71 (15%)
HELP 449..515 CDD:460922 30/70 (43%)
WD40 520..562 CDD:459801 21/44 (48%)
WD40 repeat 530..573 CDD:293791 19/45 (42%)
WD40 548..959 CDD:441893 159/426 (37%)
WD40 repeat 582..624 CDD:293791 19/41 (46%)
WD40 repeat 627..664 CDD:293791 17/42 (40%)
WD40 repeat 673..712 CDD:293791 13/39 (33%)
WD40 repeat 718..801 CDD:293791 34/83 (41%)
WD40 repeat 806..838 CDD:293791 14/33 (42%)
WD40 repeat 846..880 CDD:293791 10/34 (29%)
WD40 847..>1073 CDD:475233 80/230 (35%)
WD40 repeat 886..918 CDD:293791 11/31 (35%)
WD40 repeat 931..969 CDD:293791 11/37 (30%)
WD40 repeat 1002..1037 CDD:293791 15/36 (42%)
Eml1XP_038968474.1 TD_EMAP1 22..79 CDD:409268
HELP 204..275 CDD:460922 30/70 (43%)
WD40 repeat 291..339 CDD:293791 20/47 (43%)
WD40 293..715 CDD:441893 165/437 (38%)
WD40 repeat 344..384 CDD:293791 19/39 (49%)
WD40 repeat 390..432 CDD:293791 18/46 (39%)
WD40 repeat 438..473 CDD:293791 12/37 (32%)
WD40 repeat 479..548 CDD:293791 32/75 (43%)
WD40 repeat 563..598 CDD:293791 14/34 (41%)
WD40 repeat 644..685 CDD:293791 14/40 (35%)
WD40 686..>831 CDD:475233 55/149 (37%)
WD40 repeat 691..715 CDD:293791 9/23 (39%)
WD40 repeat 758..797 CDD:293791 17/41 (41%)
WD40 repeat 803..830 CDD:293791 13/26 (50%)
Blue background indicates that the domain is not in the aligned region.

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