DRSC/TRiP Functional Genomics Resources

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Protein Alignment DCX-EMAP and Rp1l1

DIOPT Version :10

Sequence 1:NP_001261850.1 Gene:DCX-EMAP / 39617 FlyBaseID:FBgn0259099 Length:1118 Species:Drosophila melanogaster
Sequence 2:NP_666358.2 Gene:Rp1l1 / 271209 MGIID:2384303 Length:1859 Species:Mus musculus


Alignment Length:758 Identity:160/758 - (21%)
Similarity:260/758 - (34%) Gaps:237/758 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   170 ARRVVFYRNGDPFFPGVELRYRPGRDVTSLDNLLDKISPKMDLPRGARYVFSMDGDRKYH----L 230
            |:::.|.:.|||.|.||.|.... |...:..:|:|::|.:|.|..|.|   |:...|..|    |
Mouse    41 AKKITFLKRGDPQFAGVRLAVHQ-RTFKTFSSLMDELSQRMPLSFGVR---SVTTPRGLHGLSAL 101

  Fly   231 DELEDGAFYVVSSFKAFKPASYGKKNGMWYASPGNQGWGSKPASRKPSIMEADL----GTLSTTS 291
            ::|:||..|:.|..|..|.:          ..||      :...:.||..:|.:    .....||
Mouse   102 EQLQDGGCYLCSDRKPPKTS----------REPG------RLQRKSPSAGQAQVFQGGHEAPETS 150

  Fly   292 GSIKRS-AGRVIRIINNLDHSVQCRVLLNLRTSQPFEEVLEDLGQVLKINGAKKMYTGTGQEVRS 355
            .|.|.. |.|.:.::.|.|...|..|:|:.:.::.....|....::|:. ..|::||..|::|.|
Mouse   151 YSWKGPVAPRRLTLVKNGDPRRQQTVVLSHKNTRSLAAFLGKASELLRF-PVKQVYTTRGKKVDS 214

  Fly   356 FSQLRNEFADVDTFYLATGTALIAGSPIRRSRSRPSVVAAAPILPTDELPKVPLRGAR----PRS 416
            ...|    .|..:..:..|........:...|..          .|.:|..|..|..|    |.:
Mouse   215 LQTL----LDGPSVLVCAGNEAFRCLEMENDRGN----------RTRKLSSVTARSERGCWGPNA 265

  Fly   417 KSRPRILYAPESEILRPNGEYTMLDIMKEEPTKVTIRGLRRTFYPPVHH----APA-DNSPPDKK 476
            |.  .::::..    |..|:...:.:..|.      .||  :.:|...|    .|| |..|.|..
Mouse   266 KQ--SVIHSRG----RSGGKLRQVSLTSER------SGL--SDHPASGHRAWAGPALDRCPQDMP 316

  Fly   477 LQLQWVHGYRGIDARRNLWVLPSGELLYYVAAVAVLFDRDEDAQRHYTGHTEDIMCM--DVHPSR 539
                                :|.|.|   |||        :|.::.        :||  |...|.
Mouse   317 --------------------VPPGSL---VAA--------DDVEKK--------VCMNEDGSLSV 342

  Fly   540 ELVASGQKAGRD--RKSQ--AHVRIWSTES--------------LQTLYVFGMGELDSGVTAVAF 586
            |:....|..|.|  |.||  ....:::..|              .|..|.:|:  |..|  |...
Mouse   343 EMKVRFQLLGEDTLRWSQRVGQASVFTAASGKGQDPREADRFCCRQEGYPWGI--LKPG--AQGL 403

  Fly   587 SQLNGGSYILAVDSGRESILSVWQW----------------QWGHLLGKVATLQEGLSGAAFHPL 635
            ...:||.. .|.|.|::|..|...|                :||  |.|       |||...|..
Mouse   404 GSYDGGCQ-EAFDVGQKSQPSYDIWRNPLATPEGTGPTPRRRWG--LAK-------LSGCKSHWR 458

  Fly   636 DDNLIITHGRGHLAFWHRRKDGFFERTDIVKQPSRSHVTSVQ------FEPDGDVITADSDGFIT 694
            .:   ..|.:||            ::.::.:..:..|..|||      :.||||.      |..|
Mouse   459 QE---ANHRKGH------------DKDNLSRVSTPRHPRSVQPGSCCPWTPDGDT------GSDT 502

  Fly   695 IYSVDSDGAYFVRTEFEAHNKGIGCLIMLGEGTLL--SGGEKDRKIAAWDSLQNYKKIADTKL-- 755
            ::.|.|..:: ..|:.|:           |||..|  :|....|.    ::....:.::||.:  
Mouse   503 LHPVSSASSH-NETDLES-----------GEGLCLEDTGPHGSRP----ETQSTERALSDTSVSA 551

  Fly   756 ---PEAAGGVRTIYPQRPGRNDGNIYVGTTRNNILEGSLQRRFTQ--VVFGH----------GRQ 805
               .|::.|...::     |:.....|..:|..:.:|......||  :...|          |.:
Mouse   552 KSREESSEGGGQLH-----RSSSQARVMASREQVTKGDNPCISTQSHLPLNHMGLQTEKYRQGTR 611

  Fly   806 LWGLAAHPDDELYATAGHDKH--------------VALWRKNK 834
            .|.::..|:..|....||...              .|.||:.|
Mouse   612 GWEVSGEPELRLALVPGHSGSQDTQRDALPAPACAPAQWRQRK 654

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCX-EMAPNP_001261850.1 DCX 166..253 CDD:214711 28/86 (33%)
DCX2_RP_like 300..372 CDD:340590 16/71 (23%)
HELP 449..515 CDD:460922 15/70 (21%)
WD40 520..562 CDD:459801 11/47 (23%)
WD40 repeat 530..573 CDD:293791 14/62 (23%)
WD40 548..959 CDD:441893 72/360 (20%)
WD40 repeat 582..624 CDD:293791 13/57 (23%)
WD40 repeat 627..664 CDD:293791 7/36 (19%)
WD40 repeat 673..712 CDD:293791 12/44 (27%)
WD40 repeat 718..801 CDD:293791 16/91 (18%)
WD40 repeat 806..838 CDD:293791 9/43 (21%)
WD40 repeat 846..880 CDD:293791
WD40 847..>1073 CDD:475233
WD40 repeat 886..918 CDD:293791
WD40 repeat 931..969 CDD:293791
WD40 repeat 1002..1037 CDD:293791
Rp1l1NP_666358.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..22
Ubl1_cv_Nsp3_N-like 42..120 CDD:475130 26/81 (32%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 115..154 10/54 (19%)
Ubl1_cv_Nsp3_N-like 160..234 CDD:475130 17/78 (22%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 263..301 8/51 (16%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 426..445 1/18 (6%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 457..593 33/177 (19%)
PHA03307 687..>926 CDD:223039
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 700..750
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 868..920
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 952..997
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1152..1211
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1227..1255
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1298..1350
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1567..1859
Blue background indicates that the domain is not in the aligned region.

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