DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DCX-EMAP and elp-1

DIOPT Version :10

Sequence 1:NP_001261850.1 Gene:DCX-EMAP / 39617 FlyBaseID:FBgn0259099 Length:1118 Species:Drosophila melanogaster
Sequence 2:NP_001256950.1 Gene:elp-1 / 180358 WormBaseID:WBGene00001248 Length:891 Species:Caenorhabditis elegans


Alignment Length:911 Identity:219/911 - (24%)
Similarity:370/911 - (40%) Gaps:214/911 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   294 IKRSAGRVIRIINNLDHSVQCRVLLNLRTSQPFEEVLEDLGQVLKINGAKKMYTGTGQEVRSFSQ 358
            ::.|...::|.:.||:...|.|        .|.......|.:  :|:|:|..||.:    .|.:.
 Worm    59 LQSSTVEILRRLQNLEIQDQSR--------SPTCSGYSSLPR--RISGSKSSYTMS----PSHAP 109

  Fly   359 LRNEFADVDTFYL-----------------------ATGTALIA------GSPIRRSRSRPSVVA 394
            .|:..|:..:.|:                       :.|...::      |||:|:      .|:
 Worm   110 PRSSHANSKSLYINGMNNNSEEVSPGPPRHRPPTRGSDGMVNVSVGKSARGSPMRK------WVS 168

  Fly   395 AAPILPTDELPKV-------------PL-----RGARPRSKSRPRILYAPESEILRPNGEYTMLD 441
            ...:..||...::             |:     |.:....:|.|.:|              ::..
 Worm   169 THDMKDTDRFRRLSTSSEASTSATMNPIVNSVRRLSTTHRQSSPSLL--------------SLCS 219

  Fly   442 IMKEEP-TKVTIRGLRRT--FYPPVHHAP----------------------ADNSPPDKKLQLQW 481
            ::...| |...:|...||  |.....|.|                      .|..||..|:.|:.
 Worm   220 VISRSPSTSSILRKNNRTCQFSNGSGHLPIFIGGKTVQVPVPTGYENMDPTMDQDPPTMKVTLKH 284

  Fly   482 VHGYRGIDARRNLWVLPSGELLYYVAAVAVLFD--RDEDAQRHYTGHTEDIMCMDVHPSRELVAS 544
            |:.|||.|.|.|:.:||:|||:::.|.:.||.:  .::.:||.|.|||.|:.|:.:||::.||||
 Worm   285 VYSYRGKDVRSNIEMLPTGELVFFSANLVVLMNITGEDRSQRIYHGHTCDVKCITLHPNKILVAS 349

  Fly   545 GQKAGRD-------------------------RKSQAHVRIWSTESLQTLYVFGMGELDSGVTAV 584
            ||.:...                         ..::||||||.|..|.||.|  :...:.|:..|
 Worm   350 GQSSCHSVEKFQKPEHTSPIDSPEDLVRQLEMEHTEAHVRIWDTIKLTTLMV--LNGFEKGICHV 412

  Fly   585 AFSQLNGGSYILAVDSGRESILSVWQWQWGHLLGKVATLQEGLSGAAFHPLDDNLIITHGRGHLA 649
            |||:.:.||.:..||...:.::|||.||.|...|:|....:.:....:||...|||:.:|:||.:
 Worm   413 AFSKTDSGSLLAVVDDSLKHLMSVWNWQKGKREGEVKASNDVVFECKWHPTIRNLIVLYGKGHFS 477

  Fly   650 FWHR--------RKDGFFERTDIVKQPSRSHVTSVQFEPDGDVITADSDGFITIYSVDSDGAYFV 706
            |::.        :....||..|..|.     |.|:.|..:..|:|.||:|.|:|:  |.......
 Worm   478 FFNYDPATGVLVKTVATFEGRDKPKT-----VLSMCFGENDQVVTGDSNGTISIW--DPRTCKTT 535

  Fly   707 RTEFEAHNKGIGCLIMLGEGTLLSGGEKDRKIAAWDSLQNYKKIADTKLPEAAGGVRTIYPQRPG 771
            :.....|..|:..|.:...|.:|||| |||.::.||.....:.....:||:..|..|.|.     
 Worm   536 KQAHSVHPGGVYSLTLAKSGKILSGG-KDRMVSEWDLQDLVRTRRPIELPDEKGFPRVIL----- 594

  Fly   772 RNDGNIYVGTTRNNILEGSLQR--RFTQVVFGHGRQLWGLAAHPDDELYATA--------GH-DK 825
            :|...:.:||:.|.:|.|:::.  ..|.::.|....|..|.....::|..::        .| ||
 Worm   595 QNGSELIIGTSSNTLLFGNIENSTNLTSLIEGDPGNLTFLLTCSSNQLITSSQCGTLRIWNHIDK 659

  Fly   826 HVALWRKNKLIWTIQTGYECVALAF---HPFGTLAAGSTEGHLLVINCENGAVMLTLRVCGSPLN 887
            .|..  ..|.|.::    |||.:..   |    :..|...|..:|:|......:...:...:|:.
 Worm   660 KVEF--SKKFIDSV----ECVDVDVTNTH----IILGFAAGLWIVMNITKQQTIQEKKEGTAPIT 714

  Fly   888 CVAYNQVGDMIAMGSQNGSIYLFRV--SRDGFSYKKVNKIRGSQPLTHLDWSMDGNFVQTVTIDF 950
            .|.:...|...|:.:::..:.::|:  |::.....:::.|  ..|:..||:|.|..:::..:|..
 Worm   715 AVKFAPSGATFAVATKDPHLTIYRIDASKNLLVIARIHHI--PAPIVALDFSSDSQYLRGQSIGA 777

  Fly   951 DLLFW-------DAKSLSPERSPIAMKDVKWLTNNCTVGF---LVAGQWSNRYYSTTNTIVATCS 1005
            .||||       |..|         :|||||.::...:||   |||...:.:.     |.||.| 
 Worm   778 HLLFWTKAGEICDGTS---------VKDVKWGSSRVKIGFETALVAHSSNGQV-----TAVAQC- 827

  Fly  1006 RSAAHDMLASGDAEGYLRLFRYPCISPRAEFHESKVYSGMLACVRFLCGDHTLITVGGTDASLMV 1070
                .|:.|.|...|.:|:::.|..|..|.|.|...:..::..|.| .....|.:...||.|:..
 Worm   828 ----EDISACGMENGTIRIYKNPVTSVTAGFVELLGHGRIIKSVAF-SNKIQLFSCSPTDNSVFE 887

  Fly  1071 W 1071
            |
 Worm   888 W 888

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCX-EMAPNP_001261850.1 DCX 166..253 CDD:214711
DCX2_RP_like 300..372 CDD:340590 16/94 (17%)
HELP 449..515 CDD:460922 26/91 (29%)
WD40 520..562 CDD:459801 21/66 (32%)
WD40 repeat 530..573 CDD:293791 20/67 (30%)
WD40 548..959 CDD:441893 113/466 (24%)
WD40 repeat 582..624 CDD:293791 16/41 (39%)
WD40 repeat 627..664 CDD:293791 11/44 (25%)
WD40 repeat 673..712 CDD:293791 11/38 (29%)
WD40 repeat 718..801 CDD:293791 23/84 (27%)
WD40 repeat 806..838 CDD:293791 9/40 (23%)
WD40 repeat 846..880 CDD:293791 6/36 (17%)
WD40 847..>1073 CDD:475233 55/240 (23%)
WD40 repeat 886..918 CDD:293791 5/33 (15%)
WD40 repeat 931..969 CDD:293791 11/44 (25%)
WD40 repeat 1002..1037 CDD:293791 10/34 (29%)
elp-1NP_001256950.1 TD_EMAP-like 37..79 CDD:409267 4/19 (21%)
WD40 repeat 237..288 CDD:293791 10/50 (20%)
HELP 249..318 CDD:460922 20/68 (29%)
WD40 repeat 294..330 CDD:293791 13/35 (37%)
WD40 <326..570 CDD:475233 78/253 (31%)
WD40 repeat 335..367 CDD:293791 9/31 (29%)
WD40 386..770 CDD:441893 107/410 (26%)
WD40 repeat 409..450 CDD:293791 16/40 (40%)
WD40 repeat 456..497 CDD:293791 10/40 (25%)
WD40 repeat 504..539 CDD:293791 11/36 (31%)
WD40 repeat 547..584 CDD:293791 11/37 (30%)
WD40 repeat 590..624 CDD:293791 9/38 (24%)
WD40 repeat 632..668 CDD:293791 7/37 (19%)
WD40 repeat 713..750 CDD:293791 5/36 (14%)
WD40 repeat 822..851 CDD:293791 11/33 (33%)
Blue background indicates that the domain is not in the aligned region.

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