DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment DCX-EMAP and eml4

DIOPT Version :10

Sequence 1:NP_001261850.1 Gene:DCX-EMAP / 39617 FlyBaseID:FBgn0259099 Length:1118 Species:Drosophila melanogaster
Sequence 2:NP_001429631.1 Gene:eml4 / 100334728 -ID:- Length:1020 Species:Danio rerio


Alignment Length:874 Identity:267/874 - (30%)
Similarity:413/874 - (47%) Gaps:133/874 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly   318 LNLRTSQPFEEVL---EDLGQVLK---------INGAKKMYTGTGQ----EVRSFSQL------- 359
            |.||..|..:|:.   ..|..||:         ...|||.....||    |..|.|.:       
Zfish    42 LELRVQQQEDELTVMKAALADVLRRLAQSEDSAAAAAKKQQNTKGQAPMREAYSMSCIANGSSSG 106

  Fly   360 RNEFADVDTFYLATGTAL--IAGSPIRRSRSRPSV----------------VAAAPILPTDELP- 405
            |....|..|..:|....|  .|.|...|.:.:||:                .:||| .|:...| 
Zfish   107 RKSHRDTATVSVARKETLSSAAKSGSERKKDKPSMEEIKEKEEPPQANDKPPSAAP-SPSSNPPS 170

  Fly   406 ------------KVPL-RGA-------RPRSK-------SRPRILYAPE-----SEILRPNGEYT 438
                        .:|. ||:       |.:|.       ||.:::.|..     |:::: |.|..
Zfish   171 PHPQPPQPQRQASIPAKRGSSAKRGMERSQSSTWDSADDSRNKLVKAASTSKLLSKVVK-NAEKH 234

  Fly   439 MLDIMKE-------------EPTKVTIRGLRRTFYPP---VHHAPADNSPPDKKLQLQWVHGYRG 487
            ...::.:             |..|:.:||...|.:.|   .::.......|.::|:|:||:||||
Zfish   235 RDPVISQAKMSTREKNSQEGEFIKMFMRGRPITMFIPSDVENYDDVRTELPPERLKLEWVYGYRG 299

  Fly   488 IDARRNLWVLPSGELLYYVAAVAVLFDRDEDAQRHYTGHTEDIMCMDVHPSRELVASGQKAGRD- 551
            .|.|.|:::||:||::|::|:|.|||:.:|..||||.|||:.:.|:.|||.:..:|:||.||.| 
Zfish   300 RDCRANVYLLPTGEIVYFIASVVVLFNYEERTQRHYVGHTDCVKCLAVHPDKIRIATGQIAGVDK 364

  Fly   552 --RKSQAHVRIWSTESLQTLYVFGMGELDSGVTAVAFSQLNGGSYILAVDSGRESILSVWQWQWG 614
              |..|.|||||.:.||.|..:.|:|..:.||.::|||:.:.|:::..:|...|.:|:||.||..
Zfish   365 DGRPLQPHVRIWDSVSLSTQQIIGLGTFERGVGSLAFSKADSGTHLSVIDDSNEHMLTVWDWQKK 429

  Fly   615 HLLGKVATLQEGLSGAAFHPLDDNLIITHGRGHLAFWH------RRKDGFFERTDIVKQPSRSHV 673
            ..:.::.|..|.:....|||.|.|.|:|.|:.|:.||.      .||.|.|.:.:..|     .|
Zfish   430 SKIAEIKTTNEVVLAVEFHPTDANTIVTCGKSHIFFWTWSGSSLARKQGIFGKYEKPK-----FV 489

  Fly   674 TSVQFEPDGDVITADSDGFITIYSVDS---------DGAYFVRTEFEAHNKGIGCLIMLGEGTLL 729
            ..:.|..:||::|.||.|.:.|::..:         .||:.:..:.:||:..:..|..:..||||
Zfish   490 QCLAFLNNGDILTGDSGGIMLIWTRSTAEPAPGKGPKGAFQIARQIKAHDGSVFTLCQMRNGTLL 554

  Fly   730 SGGEKDRKIAAWDSLQNYKKIADTKLPEAAGGVRTIYPQRPGRNDGNIYVGTTRNNILEGSLQRR 794
            :||.||.||..||  .:.....|.::|:..|.:|.:   ..|:.| ...|||:||.||.|:....
Zfish   555 TGGGKDHKIILWD--HDLHPERDIEVPDQYGTIRAV---AEGKGD-QFLVGTSRNFILRGTFNDG 613

  Fly   795 FTQVVFGHGRQLWGLAAHPDDELYATAGHDKHVALWRK--NKLIWTIQTGYECVALAFHPFGTLA 857
            |...|.||..:|||||.||..:|:.|...|:.|.||..  :.|.||...........|||.|::.
Zfish   614 FQVEVQGHTDELWGLATHPFKDLFLTCAQDRQVCLWSSVDHVLEWTRLLDEHGHCADFHPSGSVV 678

  Fly   858 A-GSTEGHLLVINCENGAVMLTLRVCGSPLNCVAYNQVGDMIAMGSQNGSIYLFRVSRDGFSYKK 921
            | |:..|...|::.|...::.........|:.:.|:..|.::|:||.:..|||:.||..|..|.:
Zfish   679 AIGTHSGKWYVLDAETRDLIAIHTDGNEQLSVMRYSVDGTLLAVGSHDNFIYLYTVSDKGRKYSR 743

  Fly   922 VNKIRG-SQPLTHLDWSMDGNFVQTVTIDFDLLFWDAKS---LSPERSPIAMKDVKWLTNNCTVG 982
            ..|..| |..:||||||.|..|:.:.:.|:::|:||..:   |...||  ..||:.|.|..|.:|
Zfish   744 YGKCTGHSSYITHLDWSPDNKFIMSNSGDYEILYWDIPNGCKLIRNRS--ECKDIDWATYTCVLG 806

  Fly   983 FLVAGQWSNRYYSTTNTIVATCSRSAAHDMLASGDAEGYLRLFRYPCISPRAEFHESKVYSGMLA 1047
            |.|.|.|..   .:..|.:....||....::|..|....:.||:|||..|:|..|:...:|..:.
Zfish   807 FHVFGVWPE---GSDGTDINALIRSHNRKVIALADDFCKVHLFQYPCSRPKAPSHKYSAHSSHVT 868

  Fly  1048 CVRFLCGDHTLITVGGTDASLMVWDIVEE 1076
            .|.|:..|..|::.||.|.|:|.|.:||:
Zfish   869 NVSFMHNDSHLVSTGGKDMSIMQWRLVEK 897

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
DCX-EMAPNP_001261850.1 DCX 166..253 CDD:214711
DCX2_RP_like 300..372 CDD:340590 19/76 (25%)
HELP 449..515 CDD:460922 27/68 (40%)
WD40 520..562 CDD:459801 23/44 (52%)
WD40 repeat 530..573 CDD:293791 20/45 (44%)
WD40 548..959 CDD:441893 143/432 (33%)
WD40 repeat 582..624 CDD:293791 12/41 (29%)
WD40 repeat 627..664 CDD:293791 15/42 (36%)
WD40 repeat 673..712 CDD:293791 11/47 (23%)
WD40 repeat 718..801 CDD:293791 29/82 (35%)
WD40 repeat 806..838 CDD:293791 14/33 (42%)
WD40 repeat 846..880 CDD:293791 9/34 (26%)
WD40 847..>1073 CDD:475233 74/230 (32%)
WD40 repeat 886..918 CDD:293791 12/31 (39%)
WD40 repeat 931..969 CDD:293791 15/40 (38%)
WD40 repeat 1002..1037 CDD:293791 11/34 (32%)
eml4NP_001429631.1 None
Blue background indicates that the domain is not in the aligned region.

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