DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17839 and Myom1

DIOPT Version :10

Sequence 1:NP_996085.2 Gene:CG17839 / 39616 FlyBaseID:FBgn0036454 Length:1656 Species:Drosophila melanogaster
Sequence 2:NP_001178513.1 Gene:Myom1 / 316740 RGDID:631436 Length:1689 Species:Rattus norvegicus


Alignment Length:1193 Identity:230/1193 - (19%)
Similarity:368/1193 - (30%) Gaps:387/1193 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 ILESKDALL-----TCVVSDNSSNNTVIWKK--GDEILTAGTVRVTKDHRVRILHDENP---KGK 87
            :|||::|::     |......:|..::..|:  ..:..||................|..   |.:
  Rat   181 LLESEEAIMASKQSTASKQSTASKQSIASKQSTASKQSTASKQSTASKQATSTFQQEETFERKSR 245

  Fly    88 NLETGGEVWVL-LIKTLKPNDSGAYICELNSDPVLRS--------IHILTVKE---LHSSTGGPG 140
            |:....:...| |.|||:  ::.||..:||.|.:|.:        .|.:..||   ||.|..|  
  Rat   246 NISIREKAEELSLRKTLE--ETQAYHGKLNEDHLLHAPEFIIKPRSHTVWEKENVKLHCSVAG-- 306

  Fly   141 NSTDTSTAESSDVFLLPPPLDAQDNRSFWRPSQVPPLVTHDFTECCERANVSTQCMGFCNVH--- 202
                           .|.|      |..|..:|||                       .|||   
  Rat   307 ---------------WPEP------RLTWYKNQVP-----------------------INVHANP 327

  Fly   203 --NILDGTTGIDP-EACERDFPGIVRCMADGRN-------HVPCCVDKQIPDLCQDMCRG----- 252
              .|::...|:.. |..:.||....:..|...|       :....|.:...:|...:.||     
  Rat   328 EKYIIESRYGMHTLEISKCDFEDTAQYRASAMNVQGEVSAYASVVVKRYKGELDDSLLRGGVSMP 392

  Fly   253 ---EYTP----------FTDKLKT---------RVSC-------VQHTLSGLQCILKGVQLIPSS 288
               ..||          |.||...         .:.|       ::|....:|....|..:.||.
  Rat   393 LSFAVTPYGYASKFEIHFDDKFDVSFGREGETMSLGCRVVITPEIKHVQPEVQWYRNGAPVSPSK 457

  Fly   289 PTFVTIENVSETSVTIGWTAPDKLADRVSGYTINLTTLHSFDE-------------DELSGEIVH 340
                             |..|....||.   |:..:.|:..||             ::.|..:..
  Rat   458 -----------------WVQPHWSGDRA---TLTFSHLNKEDEGLYTIRVRMGEYYEQYSAYVFV 502

  Fly   341 RTASDSPES-----ISLYSVPTNQTQLTLSNLSPLTMYAVIVTATNEFGSSLPTERLRFFTHTSA 400
            |.|....|.     :.:.|:..|:..:.:|...|..          :.||.:    |.:|..   
  Rat   503 RDADAEIEGAPAAPLDVVSLDANKDYIIISWKQPAV----------DGGSPI----LGYFID--- 550

  Fly   401 SAAESKAGTTDKQAMPQLPDTRQCCED----------NGMTH-RMCLDKMCDPQKTDQANLPDFM 454
               :.:.||          ||...|.|          .|:.. |..:.::....||. ..||   
  Rat   551 ---KCEVGT----------DTWSQCNDTPVKFARFPVTGLIEGRSYIFRVRAVNKTG-IGLP--- 598

  Fly   455 VCAPWSNITFNCLANNIDHTPCCRARGIPSACFPLCAGKLTSLDFSLFKCLRFMSEYNSCLFQGY 519
                 |.::....|  :|.....|.:..|||.:   .|::            .::|....    .
  Rat   599 -----SRVSEPVAA--LDPAEKARLKSRPSAPW---TGQI------------IVTEEEPT----E 637

  Fly   520 GVLADPPSKLRTVAKTDSFVILDWNKPKRLADTVSTYHVKFRRLGVG-DDYLTVEK----RQPPL 579
            ||:..||:.|.....|.|:|:|.|..|.:.......|.|:  :..|| :::..|..    :.|..
  Rat   638 GVIPGPPTDLSVTEATRSYVVLSWKPPGQRGHEGIMYFVE--KCDVGTENWQRVNTELPVKSPRF 700

  Fly   580 ILEGLESDIYYEFYVVSINAYGKSEAS--------------PRLITRTLPAEPVQQTA------- 623
            .|..|.....|.|.|...|:.|..|.|              |:...:.:|:.....:.       
  Rat   701 ALFDLVEGKSYRFRVRCSNSAGVGEPSESTEVTVVGDKLDIPKAPGKIIPSRNTDTSVVVSWEES 765

  Fly   624 ------ARYNMTTCCQASGLLPQC--APL------C-------SYNIRLSDIERLGPACRAQ--M 665
                  ..|.:.:....||....|  .|:      |       ||..|:..:...|.:..:|  .
  Rat   766 KDAKELVGYYIESSVVGSGQWEPCNNNPVKGSRFTCHGLTTGQSYIFRVRAVNAAGLSEYSQDSE 830

  Fly   666 PILARCAAGGRDHSPCCSRRGVINACMPLCRGVMPLALTTKSSSASAAAAATSSSSGATAATS-- 728
            .|..:.|.||                     ||.|......|.:......:..:.|||:..||  
  Rat   831 AIEVKAAIGG---------------------GVSPDVWPQLSDTPGGLTDSGGAMSGASPPTSQK 874

  Fly   729 -ASATSNSNAAGAPSSSSSSAS---SGTSSNVPDCLSYAGNILQCFEEGTQN----------IPG 779
             |..:|..|....|||.|:...   |..:.:|.:.||.....:...|:....          :|.
  Rat   875 DALPSSKPNKPSPPSSPSNRGQKEVSKVNGSVQEELSPPSMEVASKEQSKSGPPEKKKDPVAVPS 939

  Fly   780 PPEDVHATFVNQSSVSLAWTQPDVDNSNSSSSGNASPGDMITGDELAAGAVDPANAGKDVPNAGD 844
            ||.|:......:.|:.|.|.|||       .:|.|.    |||..:               |..:
  Rat   940 PPYDITCLESFRDSMVLGWKQPD-------KTGGAE----ITGYYV---------------NYRE 978

  Fly   845 ATSGTTGTEDIEFIVQYGKVNNMTMYETVAKLENELTTNETSIDLTNLDANALYRITVVTRGKFG 909
            ...|..|        ::.:.|...:.:...|             ::.|..|.:|:..|......|
  Rat   979 VVGGVPG--------KWREANIKAVSDAAYK-------------ISELKENTVYQFQVSAMNIAG 1022

  Fly   910 TSLPASMLLLNTTDQQRTGEAW--GAPSPPHSLTVVAHSATWMQLTWQPPEYAHPHERITYRVYH 972
            ...|:::      .:....|.|  ..|.|||||.:.......:.|.|:||.|:.......|.|..
  Rat  1023 LGAPSAV------SECFKCEEWTIAVPGPPHSLKLSEVRKNSLVLQWKPPVYSGRTPVTGYFVDL 1081

  Fly   973 KAMRA--EQF-----IKIETKLAWLRMNNLKPSSQHVLYVEAVGERGDSLPSETLVAWTDPALPA 1030
            |...|  :|:     ..|..|  :||:..||....:|..|.|:.:.|...||       |.|.|.
  Rat  1082 KEASAKDDQWRGLNEAAIPNK--YLRVQGLKEGISYVFRVRAINQAGVGKPS-------DLAGPV 1137

  Fly  1031 FVD--PPTVHPADNIPEGGSMTI 1051
            ..:  |.|.....|:.:.|.:::
  Rat  1138 VAETRPGTKEVVVNVDDDGVISL 1160

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17839NP_996085.2 Ig 33..116 CDD:472250 19/93 (20%)
DB 185..278 CDD:460293 22/139 (16%)
FN3 286..396 CDD:238020 21/127 (17%)
DB 424..515 CDD:460293 17/101 (17%)
FN3 524..613 CDD:238020 25/107 (23%)
DB 631..>705 CDD:460293 17/90 (19%)
FN3 773..>1036 CDD:442628 60/283 (21%)
FN3 934..1024 CDD:238020 28/96 (29%)
Ig 1029..1103 CDD:472250 5/25 (20%)
Ig strand B 1049..1053 CDD:409562 0/3 (0%)
Ig strand C 1062..1066 CDD:409562
Ig strand E 1080..1083 CDD:409562
Ig strand F 1093..1098 CDD:409562
IG_like 1126..1216 CDD:214653
Ig strand B 1134..1138 CDD:409390
Ig strand C 1148..1152 CDD:409390
Ig strand E 1182..1186 CDD:409390
Ig strand F 1196..1201 CDD:409390
Ig strand G 1209..1212 CDD:409390
DB 1229..1315 CDD:460293
FN3 1323..1457 CDD:238020
Myom1NP_001178513.1 IgI_titin_I1-like 281..374 CDD:409543 24/138 (17%)
Ig strand A 281..283 CDD:409543 0/1 (0%)
Ig strand A' 285..291 CDD:409543 0/5 (0%)
Ig strand B 298..305 CDD:409543 3/6 (50%)
Ig strand C 311..316 CDD:409543 2/4 (50%)
Ig strand C' 318..321 CDD:409543 3/25 (12%)
Ig strand D 329..333 CDD:409543 1/3 (33%)
Ig strand E 338..345 CDD:409543 1/6 (17%)
Ig strand F 352..360 CDD:409543 1/7 (14%)
Ig strand G 363..374 CDD:409543 0/10 (0%)
Ig 420..487 CDD:472250 14/86 (16%)
Ig strand B 426..429 CDD:409353 0/2 (0%)
Ig strand C 443..447 CDD:409353 1/3 (33%)
Ig strand E 468..472 CDD:409353 1/6 (17%)
Ig strand F 482..487 CDD:409353 0/4 (0%)
FN3 513..603 CDD:238020 21/128 (16%)
FN3 <574..>876 CDD:442628 67/354 (19%)
FN3 938..1032 CDD:238020 26/146 (18%)
FN3 1043..1132 CDD:238020 28/97 (29%)
Ig 1159..1225 CDD:472250 0/2 (0%)
Ig strand B 1160..1164 CDD:409353 0/1 (0%)
Ig strand C 1172..1176 CDD:409353
Ig strand E 1197..1201 CDD:409353
Ig strand F 1211..1216 CDD:409353
Ig <1382..1447 CDD:472250
Ig strand C 1392..1396 CDD:409353
Ig strand E 1415..1419 CDD:409353
Ig strand F 1429..1434 CDD:409353
Ig strand G 1442..1445 CDD:409353
Ig 1576..1667 CDD:472250
Ig strand B 1594..1598 CDD:409353
Ig strand C 1607..1611 CDD:409353
Ig strand E 1633..1637 CDD:409353
Ig strand F 1647..1652 CDD:409353
Ig strand G 1660..1663 CDD:409353
Blue background indicates that the domain is not in the aligned region.

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