DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG17839 and Myom3

DIOPT Version :10

Sequence 1:NP_996085.2 Gene:CG17839 / 39616 FlyBaseID:FBgn0036454 Length:1656 Species:Drosophila melanogaster
Sequence 2:NP_001101457.2 Gene:Myom3 / 313625 RGDID:1310060 Length:1438 Species:Rattus norvegicus


Alignment Length:1636 Identity:294/1636 - (17%)
Similarity:473/1636 - (28%) Gaps:584/1636 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    33 ILESKDALLTCVVSDNSSNNTVIWKKGD-----EILTAGTVRVTKDHRVRILHDENPKGKNLETG 92
            :.|....||||.: ..|....|.|.|.|     .:..||..|:|.::.:..|   ..:...:|..
  Rat   165 VWEYTTVLLTCTI-QGSFPFQVTWYKDDIQIDPRLFPAGKYRITNNYGLLTL---EIRRCTVEDS 225

  Fly    93 GEVWVL--------------LIKTLKPNDSGAYICELNSDPVLRSIHILTVKELHSSTGGPGNST 143
            ....||              ||:|....|:|     .:|:...||:.            ||    
  Rat   226 ATYTVLVKNAFGQASSFAKVLIRTYLGKDAG-----FDSEIFKRSMF------------GP---- 269

  Fly   144 DTSTAESSDVFLLPPPLDAQDNRSFWRPSQVPPLVTHDFTECCERANVSTQCMGFCNVHNILDGT 208
               |.|.:.|.   .|:.||:.    .|..:..|.:.|..|..||                    
  Rat   270 ---TVEFTSVL---KPIFAQEK----EPFSLTCLFSDDVLEAEER-------------------- 304

  Fly   209 TGIDPEACERDFPGIVRCMADGRNHVPCCVDKQIPDLCQDMCRGEYTPFTDKLKTRVSCVQHTLS 273
                           ::...|||             |.:...|.:......:...:|||......
  Rat   305 ---------------IQWFRDGR-------------LLRSSTRRQILYADRQASVKVSCAYKEDE 341

  Fly   274 GLQCILKGVQL--------------------IPSSPTFVTIENVSETSVTIGWTAP-DKLADRVS 317
            |...|......                    .|.||..|...||....:|:.|..| |.....::
  Rat   342 GFYTIRVSSPFGPQEQSAYVFIRDAAAEKPGAPGSPLNVRCLNVHRDCLTLTWVPPSDTRGSTIT 406

  Fly   318 GYTINLTTLHSFDEDELSGEIVHRTASDSPESISLYSVPTNQTQLTLSNLSPLTMYAVIVTATNE 382
            ||:|.|                  ...||.|.:.....|....:..:..|.....|...|.|.::
  Rat   407 GYSIEL------------------CQGDSEEWVPCLKTPGGTCRCPIQGLIEGQSYRFRVRAISK 453

  Fly   383 FGSSLPTERLRFFTHTSASAAESKAGTTDKQAMPQLPDTRQCCEDNGMTHRMCLDKMCDPQKTDQ 447
            .|:|||::         ||||.........|...::|      .|.|  .::.:.|         
  Rat   454 AGTSLPSK---------ASAAVVMGDYDTVQKKTEIP------FDLG--RKITISK--------- 492

  Fly   448 ANLPDFMVCAPWSNITFNCLANNIDHTPCCRARGIPSACFPLCAGKLTSLDFSLFKCLRFMSEYN 512
                                 |:.:.     |..||||                           
  Rat   493 ---------------------NDFED-----AVTIPSA--------------------------- 504

  Fly   513 SCLFQGYGVLADPPSKLRTVAKTDSFVILDWNKPKRLADTVSTYHVKFRRLGVGD-DYLTVEK-- 574
                         |:.:......|::.:|.|.:|........||.::...:|.|. :.::.|.  
  Rat   505 -------------PTNVHASEIRDTYAVLSWEEPHPRGRAPLTYTLEKSVIGSGTWEAISSETPI 556

  Fly   575 RQPPLILEGLESDIYYEFYVVSINAYGKSEASPRLITRTLPAEPVQQTAARYNMTTCCQASGLLP 639
            :.|...|..||....|.|.|.::|.||.|:.|.       |:||:          |.......||
  Rat   557 KSPRFALLDLEKGKSYVFRVRALNQYGMSDPSE-------PSEPI----------TLKGKPATLP 604

  Fly   640 QCAPLCSY-NIRLSDIERLGPACRAQMPILARCAAGGRDHSPCCSRRGVINACMPLCRGVMPLAL 703
            ..|.:.|: |.:.|            :.:......||.:                    ::...:
  Rat   605 PPAQVQSFRNTQTS------------VSLTWEPVDGGSE--------------------LLGYYI 637

  Fly   704 TTKSSSASAAAAATSSSSGATAATSASATSNSNAAGAPSSSSSSASSGTSSNVPDCLSYAGNILQ 768
            .::.:.||......:.....|..|.....:....... ..|.|.|..|.||.|            
  Rat   638 YSREAGASEWQTVNNKPIQDTKFTVPGLRTGKEYEFC-IRSVSEAGVGESSAV------------ 689

  Fly   769 CFEEGTQNI--------PGPPEDVHATFVNQSSVSLAWTQPDVDNSNSSSSGNASPGDMITGDEL 825
                 ||.|        |..|.|.......::.:.:.|..|       ...|         |.::
  Rat   690 -----TQPIRVKQALATPSAPYDFALLNCGKNEMVIGWKPP-------KRRG---------GGKI 733

  Fly   826 AAGAVDPANAGKDVPNAGDATSGTTGTEDIEFIVQYGKVNNMTMYETVAKLENELTTNETSIDLT 890
            ....||..:                 :|:::    :..|::......|.|             :|
  Rat   734 LGYYVDQHD-----------------SEELD----WHPVSHQPNPSRVCK-------------VT 764

  Fly   891 NLDANALYRITVVTRGKFG---TSLPASMLLLNTTDQQRTGEAW--GAPSPPHSLTVVAHSATWM 950
            ||.....|..........|   .|.|:|:.         ..:.|  ..|.||:.:......||.:
  Rat   765 NLHEGHFYEFRARAMNWAGIGELSAPSSLF---------ECKEWTMPEPGPPYDVRASEIQATSV 820

  Fly   951 QLTWQPPEYAHPHERITYRVYHKAMRAEQFIKI---ETKLAWLRMNNLKPSSQHVLYVEAVGERG 1012
            .|.|:||.|........|||..:.:.:|::..:   .|....||:::|:|..|::..|:|:...|
  Rat   821 MLQWEPPLYIGAGPVTGYRVSFQEIGSEEWKPVTPDATSDTHLRVSDLQPGKQYMFRVQAMNSAG 885

  Fly  1013 DSLPSETLVAWTDPALPAFVDPPTVHPAD-NIPEGGSMTILCLAF------------------GN 1058
            ...||..    |||.|  ..|.|..|..: .:.|.|.   :.|||                  |.
  Rat   886 LGQPSVP----TDPVL--LEDKPDAHEIEVGVDEEGQ---IYLAFEAPEAPDFPEFQWSKDYKGP 941

  Fly  1059 PAP----------------------TISLYVGGHLVRQDA-----SRHMVT-----VIHNVSADM 1091
            |.|                      .:.:|   .:|..||     :.|.:|     .:..:|.::
  Rat   942 PDPQRVEVKDEINKSKVILKEPDLQDLGVY---SVVVTDADEDTSASHTLTEEELNKLKKLSHEI 1003

  Fly  1092 EHVSCYADNGYGVPMQATRRVNICYPPKIQAAGITVANIGDEIELRCTVDSK-----PAPKTIFW 1151
            .:......:|:.|.:.....|.:         .:.|..:....||....:.|     |..|..|.
  Rat  1004 RNPVIKLISGWNVDILEQGEVRL---------WLEVEKLSPAAELHLIFNEKEIFSSPNRKINFD 1059

  Fly  1152 REKDGRVPVI-------NGGNYFISVKANESRPSI--------YTMSLRISKLQAND----VGDY 1197
            ||| |.|.||       :.|:|...::..:::..|        :...||.:..:..|    .|.|
  Rat  1060 REK-GLVEVIIQQLSEDDKGSYTAQLQDGKAKNQITLALVDDDFDKLLRKADAKRRDWKRKQGPY 1123

  Fly  1198 FCHADNPFGATTTPVSVRIRNTPALNHNVSECCAAQNVSMACR-SACSYYVDFDAIADRPE---- 1257
            |   .:|                 |...|:|.|   .|.:.|: :.......|..:..:.|    
  Rat  1124 F---QDP-----------------LTWKVTEDC---QVLLTCKVTNTKKETRFQWLFQKKEAPRG 1165

  Fly  1258 -----------CIVDFDKLMRCAADGSDHRSCCADEHVPRKCLNWCRGESVRSKEIC--SLQYAR 1309
                       ||.:|.|     .|...:|:..:||          |||.....::.  :|....
  Rat  1166 QYSPQTGDGSLCIEEFSK-----EDQGLYRAVVSDE----------RGEDDTVLDLTGEALDAVL 1215

  Fly  1310 TIVG---CFEKNRDRLPGPPENI----VVSVVSDSEVNVRWDAPTKNPNAVDGYR-------IFY 1360
            |.:|   .......::.|..|.|    .|...:...:...|....|...:.|..|       |:.
  Rat  1216 TELGRISALSATPLKIQGTEEGIRLFSKVKYYNVDYMKTAWFHKDKRLESGDRVRAGTTLDEIWL 1280

  Fly  1361 HEAAILPPTSSS--------SSGSPSSDSGSSMENPGMDTLAAMNNATSMGNSNNAMAALEIRRI 1417
            |   ||.|..|.        ::|.......:.:.....|...|.:...      .|:|.:|..|.
  Rat  1281 H---ILDPKDSDKGKYTLEITAGKEVCQLSADLSGQAFDDALAEHQRL------KALAVIEKNRA 1336

  Fly  1418 DVKDTTISINGL--------KKDVLYELVVKAGNSYGASVLTD--PIRFTLGEHHV----TSATS 1468
            .|      :.||        .|.:....|:....|...|.|.:  |:.| |..:|:    |..|.
  Rat  1337 KV------VRGLPDVATIMEDKTLCLTCVISGDPSPEISWLKNDQPVSF-LDRYHMEVKGTEVTI 1394

  Fly  1469 SYSSAVGTISG 1479
            :........||
  Rat  1395 TIDKVTSEDSG 1405

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG17839NP_996085.2 Ig 33..116 CDD:472250 23/101 (23%)
DB 185..278 CDD:460293 11/92 (12%)
FN3 286..396 CDD:238020 26/110 (24%)
DB 424..515 CDD:460293 9/90 (10%)
FN3 524..613 CDD:238020 22/91 (24%)
DB 631..>705 CDD:460293 8/74 (11%)
FN3 773..>1036 CDD:442628 55/278 (20%)
FN3 934..1024 CDD:238020 25/92 (27%)
Ig 1029..1103 CDD:472250 19/124 (15%)
Ig strand B 1049..1053 CDD:409562 0/3 (0%)
Ig strand C 1062..1066 CDD:409562 0/3 (0%)
Ig strand E 1080..1083 CDD:409562 1/7 (14%)
Ig strand F 1093..1098 CDD:409562 0/4 (0%)
IG_like 1126..1216 CDD:214653 24/113 (21%)
Ig strand B 1134..1138 CDD:409390 2/3 (67%)
Ig strand C 1148..1152 CDD:409390 1/3 (33%)
Ig strand E 1182..1186 CDD:409390 1/3 (33%)
Ig strand F 1196..1201 CDD:409390 2/4 (50%)
Ig strand G 1209..1212 CDD:409390 0/2 (0%)
DB 1229..1315 CDD:460293 19/106 (18%)
FN3 1323..1457 CDD:238020 30/162 (19%)
Myom3NP_001101457.2 Ig 154..248 CDD:472250 19/86 (22%)
Ig strand B 171..175 CDD:409353 2/3 (67%)
Ig strand C 184..188 CDD:409353 1/3 (33%)
Ig strand E 213..217 CDD:409353 1/6 (17%)
Ig strand F 227..232 CDD:409353 1/4 (25%)
Ig strand G 240..243 CDD:409353 0/2 (0%)
Ig 272..363 CDD:472250 21/145 (14%)
Ig strand C 304..308 CDD:409353 1/38 (3%)
Ig strand E 329..333 CDD:409353 0/3 (0%)
Ig strand F 343..348 CDD:409353 1/4 (25%)
Ig strand G 356..359 CDD:409353 0/2 (0%)
FN3 374..460 CDD:238020 25/103 (24%)
FN3 <437..>709 CDD:442628 74/430 (17%)
FN3 702..792 CDD:238020 20/139 (14%)
FN3 804..893 CDD:238020 25/92 (27%)
IG_like 1127..1207 CDD:214653 20/114 (18%)
Ig strand B 1138..1142 CDD:409353 1/3 (33%)
Ig strand C 1152..1156 CDD:409353 1/3 (33%)
Ig strand E 1174..1178 CDD:409353 0/3 (0%)
Ig strand F 1188..1193 CDD:409353 1/4 (25%)
Ig strand G 1201..1204 CDD:409353 0/2 (0%)
Ig 1336..1426 CDD:472250 16/77 (21%)
Ig strand B 1354..1358 CDD:409353 0/3 (0%)
Ig strand C 1367..1371 CDD:409353 1/3 (33%)
Ig strand E 1392..1396 CDD:409353 1/3 (33%)
Ig strand F 1406..1411 CDD:409353 294/1636 (18%)
Ig strand G 1419..1422 CDD:409353
Blue background indicates that the domain is not in the aligned region.

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