DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Helz and SDE3

DIOPT Version :9

Sequence 1:NP_001261848.1 Gene:Helz / 39613 FlyBaseID:FBgn0036451 Length:2103 Species:Drosophila melanogaster
Sequence 2:NP_172037.1 Gene:SDE3 / 837047 AraportID:AT1G05460 Length:1002 Species:Arabidopsis thaliana


Alignment Length:770 Identity:211/770 - (27%)
Similarity:345/770 - (44%) Gaps:168/770 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly   587 RELLERYPCPRAATFTLTQSTIVEKRLTQNNYRSRIHELLSVEEIARYEQIARYNVRTRLTVASN 651
            ||::|....|          ..:.:.||..||.:....||.:||:...|.:..|::         
plant   224 REMIENKEFP----------DDLNEGLTARNYANYYKTLLIMEELQLEEDMRAYDM--------- 269

  Fly   652 YILTPAGMATSTAKYSLAGELFALMRLGKDISEDTSPG----RLILSNCSSVYISKPEDPDSKAD 712
                               |..::.|.|..:|.:. ||    |..|.:...:::....|     |
plant   270 -------------------ENVSMKRRGIYLSLEV-PGLAERRPSLVHGDFIFVRHAYD-----D 309

  Fly   713 PTKRAVYEALIEDKGKNVIYLKLSAKCVEAMALQADTELEV-DIQFQLNRMPYCEWHNAVD--KI 774
            .|..| |:..:.....:.:::|.:::     ..|..|...| :::|..||:.....:.|||  ::
plant   310 GTDHA-YQGFVHRVEADEVHMKFASE-----FHQRHTAGSVYNVRFTYNRINTRRLYQAVDAAEM 368

  Fly   775 TDFRLIFPA-------TELEPSIPWTPKKQWADSCEPKLNAKQREAVNAITTALSIK-LPPILLI 831
            .|...:||:       .:.:|.:|          ..|.|||:|   :.:|...|..| .||.::.
plant   369 LDPNFLFPSLHSGKRMIKTKPFVP----------ISPALNAEQ---ICSIEMVLGCKGAPPYVIH 420

  Fly   832 GPFGTGKTYTLAQAIKQL-LTQPEAKILICTHSNSAADLYIKEYLHPWIEEG--LKEATPLRVYY 893
            ||.|||||.||.:||.|| .||..|::|:|..||||||..:::.|   ..||  :|:....|:..
plant   421 GPPGTGKTMTLVEAIVQLYTTQRNARVLVCAPSNSAADHILEKLL---CLEGVRIKDNEIFRLNA 482

  Fly   894 HKRWSATVNGVVQKYCITDGVGNFLRPTVEDIMRHRIVVVTLSISMELATLGLPKGLFTHIFLDE 958
            ..|....:...:.::|..|.: .|..|.::.:.|:::||.|...:..|...|:.:|.||||.|||
plant   483 ATRSYEEIKPEIIRFCFFDEL-IFKCPPLKALTRYKLVVSTYMSASLLNAEGVNRGHFTHILLDE 546

  Fly   959 AAQAMECEAIMPLA-LANDSTRIVLAGDHMQMSPELFSAFAKERKLHISLLERLY--DHY---PS 1017
            |.||.|.|.::.:: |....|.:|||||..|:.|.::|..|:...|..|.||||:  |:|   ..
plant   547 AGQASEPENMIAVSNLCLTETVVVLAGDPRQLGPVIYSRDAESLGLGKSYLERLFECDYYCEGDE 611

  Fly  1018 NFPCKILLCENYRAHEAIIRFTSELFYEQKLVASGKQ-----------PRHDRFYPLTFFTTRGE 1071
            |:..|  |.:|||.|..|:...|:|||:.:||||.:.           |..:  :|:.|:..:|.
plant   612 NYVTK--LVKNYRCHPEILDLPSKLFYDGELVASKEDTDSVLASLNFLPNKE--FPMVFYGIQGC 672

  Fly  1072 DVQDKNSTAFYNNAEVYEVVERVSELRKRWPSAWGKLNDTSIGIMTPYSDQVFRIRSELRKRRMG 1136
            |.::.|:.:::|..|:.:|:|.:..|     :|...:.:..||::|||..||.:|:..|.:..|.
plant   673 DEREGNNPSWFNRIEISKVIETIKRL-----TANDCVQEEDIGVITPYRQQVMKIKEVLDRLDMT 732

  Fly  1137 GISVERVLNVQGKQFRAVFLSTVRTRRTCMPQGSAPGSASTTSIGDADADY--GFLSNSKLLNTA 1199
            .:.|..|...||::.:.:.:||||               ||....:.|..|  |||||.:..|.|
plant   733 EVKVGSVEQFQGQEKQVIIISTVR---------------STIKHNEFDRAYCLGFLSNPRRFNVA 782

  Fly  1200 ITRAQSLVAVVGDPVALCSIGRCRKVWERFIEICDEHKSLFGLTWSNLRSQLDGVELKRGYVLNP 1264
            ||||.||:.::|:|..:|.    ...|.:.:..|.::.:..|.          |:         |
plant   783 ITRAISLLVIIGNPHIICK----DMNWNKLLWRCVDNNAYQGC----------GL---------P 824

  Fly  1265 LAPEFVPRALQPEAYLREQAALYLNGPQHGHGGHGPPGPPAHFANAAGMLGPGPA 1319
            ...|||     .|.:.:|.::   ||||:         ||....|.:|.|..|.|
plant   825 EQEEFV-----EEPFKQEGSS---NGPQY---------PPEAEWNNSGELNNGGA 862

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
HelzNP_001261848.1 zf-CCCH 329..353 CDD:279036
TIGR00376 657..1236 CDD:273041 178/615 (29%)
AAA 810..>886 CDD:99707 34/79 (43%)
AAA_12 1003..1213 CDD:289832 72/227 (32%)
SDE3NP_172037.1 DEXXQc_Helz-like 396..622 CDD:350796 85/234 (36%)
AAA_12 592..796 CDD:372468 72/227 (32%)
Ago_hook 830..957 CDD:371044 14/50 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG1112
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D286011at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10887
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
65.880

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