DRSC/TRiP Functional Genomics Resources

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Protein Alignment Tdrd3 and RMI1

DIOPT Version :10

Sequence 1:NP_648724.1 Gene:Tdrd3 / 39612 FlyBaseID:FBgn0036450 Length:836 Species:Drosophila melanogaster
Sequence 2:NP_079221.2 Gene:RMI1 / 80010 HGNCID:25764 Length:625 Species:Homo sapiens


Alignment Length:221 Identity:59/221 - (26%)
Similarity:94/221 - (42%) Gaps:44/221 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 RKIVNDALNRDLRDIGGGALP------AKRE-------------DATLPGKIVLQVQRVRNIAAP 77
            :::....|..||||:....||      .|.|             |.:.|....:|..|.:|....
Human    50 KQVFEQWLLTDLRDLEHPLLPDGILEIPKGELNGFYALQINSLVDVSQPAYSQIQKLRGKNTTND 114

  Fly    78 KANEESKAAP--------RLLQLDLSDGQNSIKALELEPVPQLNLNVAPGSKIYFKAEKLQLMQG 134
            ....|::..|        |:|.|.|:||...|:.:|.:|:|.|:.::.||:||.... .:....|
Human   115 LVTAEAQVTPKPWEAKPSRMLMLQLTDGIVQIQGMEYQPIPILHSDLPPGTKILIYG-NISFRLG 178

  Fly   135 FLLLKSSEIQLLGGRVDALYEKWDLARTMMRYARSGRPLNGTSAPPPWVAFGRKIDSNAE----S 195
            .||||...:::|||.||||.|::...:.:.|..  |.|....|..|.        :||..    :
Human   179 VLLLKPENVKVLGGEVDALLEEYAQEKVLARLI--GEPDLVVSVIPN--------NSNENIPRVT 233

  Fly   196 EMNFKSLGEGDKDKPAK--ENEEFNA 219
            ::...:||..|::..|.  ||:|..|
Human   234 DVLDPALGPSDEELLASLDENDELTA 259

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Tdrd3NP_648724.1 RMI1_N 39..161 CDD:462527 44/148 (30%)
UBA2_spUBP14_like 246..284 CDD:270483
Tudor_TDRD3 732..782 CDD:410484
RMI1NP_079221.2 RMI1_N 14..204 CDD:462527 44/154 (29%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 257..282 1/3 (33%)
RMI1_C 489..619 CDD:465021
Blue background indicates that the domain is not in the aligned region.

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