DRSC/TRiP Functional Genomics Resources

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Protein Alignment dlp and Gpc6

DIOPT Version :9

Sequence 1:NP_524071.2 Gene:dlp / 39596 FlyBaseID:FBgn0041604 Length:765 Species:Drosophila melanogaster
Sequence 2:XP_003751581.1 Gene:Gpc6 / 691984 RGDID:1593308 Length:565 Species:Rattus norvegicus


Alignment Length:602 Identity:209/602 - (34%)
Similarity:304/602 - (50%) Gaps:93/602 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 NCSAVTHIFQARGIDAIEIPQKPSNERVLRYCESPSVGTCCTYNMETRMAMQSRQQLEGHTKDQI 143
            :||.|...:.|:|....:||.:......||.|  |...||||..||.:::.||:.:.|...::..
  Rat    29 SCSEVRQAYGAKGFSLADIPYQEIAGEHLRIC--PQEYTCCTTEMEDKLSQQSKLEFENLVEETS 91

  Fly   144 SRMSGILGSKATKFKDIFTALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVD 208
            ..:.....|:..||.:.|..||:.:....|.||:||||::|.:||.||.|||.||:.|:..|.|:
  Rat    92 HFVRTTFVSRHKKFDEFFRELLENAEKSLNDMFVRTYGMLYMQNSEVFQDLFTELKRYYTGGNVN 156

  Fly   209 LLEVMDKFFNTLYQKMFTVLNTQYTFDENYMRCVSEHMKELKPFGDVPDKLSVQIKRSFVATRTY 273
            |.|:::.|:..|.::||.::|.||.|.|:|:.|||::..:||||||||.||.:|:.|:|:|.||:
  Rat   157 LEEMLNDFWARLLERMFQLINPQYHFSEDYLECVSKYTDQLKPFGDVPRKLKIQVTRAFIAARTF 221

  Fly   274 GQALTTASEVAKKVLNVRLNADCTGALTKMQHCGACKGY-TEKPCTNYCVNVIKGCLHYQHEFDS 337
            .|.||...|||.:|..|.....|..||.||.:|..|:|. |.:||.|||:||:||||..|.:.|:
  Rat   222 VQGLTVGREVANRVSKVSPTPGCIRALMKMLYCPYCRGLPTVRPCNNYCLNVMKGCLANQADLDT 286

  Fly   338 EWENFAMAMDKVAERLLGSFNIVMVVEPLNIKISEAIMNFQDSGQDITNRVFQGCGRPKLKKMKR 402
            ||..|..||..|||||.|.|||..|::|:::||||||||.|::...::.:||||||:||.....|
  Rat   287 EWNLFIDAMLLVAERLEGPFNIESVMDPIDVKISEAIMNMQENSMQVSAKVFQGCGQPKPAPALR 351

  Fly   403 SISPKLQGVQILNARS-PVEADTLDIDETLDEAIVLRERRAAEPGSQETSAQQSQEQGVGKSGNG 466
            |            ||| |...:|              ..|...|..:.|:|              
  Rat   352 S------------ARSAPENFNT--------------RFRPYNPEERPTTA-------------- 376

  Fly   467 GGGGGGNNRRQQQRRKQQQQRRKQQNNRDDNDDDDNESGGGREPILDRIVRDIRQRVKDYKKFWS 531
              .|...:|.:...|..|..                             |.||::::|..||.||
  Rat   377 --AGTSLDRLRTVWRTMQHS-----------------------------VTDIKEKLKLSKKVWS 410

  Fly   532 NLPHSVCSNEDIASSSDVDGMCWNGHTIDRYMHSI----TTEHGSNPEFTGNPASTKQTAQMASQ 592
            .||:::|.:|.:.:.:..|..|||||:..||:..|    .|...:|||...:  .|:....:..|
  Rat   411 TLPYTICKDERVTAGTSNDEECWNGHSKARYLPEIMNDGLTNQINNPEVEVD--ITRPDTFIRQQ 473

  Fly   593 LSHLKNAIVHLRNAYNGQDVEWSEQEELPYAGSGAGSGSGSEDDEDDDEGSGLGPFEPSHKPDVE 657
            :..|:.....|:|||||.||.:.:..:   ..||:|||||..||....|      ||   ....|
  Rat   474 IMALRVMTNKLKNAYNGNDVNFQDTSD---ESSGSGSGSGCMDDVCPTE------FE---FVTTE 526

  Fly   658 RPSVDADNDDDEDAGGR 674
            .|:||.|..::|.:..:
  Rat   527 APAVDPDRREEESSASK 543

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlpNP_524071.2 Glypican 79..613 CDD:279494 190/539 (35%)
Gpc6XP_003751581.1 Glypican 23..532 CDD:279494 206/589 (35%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 283 1.000 Domainoid score I1563
eggNOG 1 0.900 - - E1_KOG3821
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 373 1.000 Inparanoid score I2042
OMA 1 1.010 - - QHG46379
OrthoDB 1 1.010 - - D275653at33208
OrthoFinder 1 1.000 - - FOG0000903
OrthoInspector 1 1.000 - - otm45892
orthoMCL 1 0.900 - - OOG6_105830
Panther 1 1.100 - - O PTHR10822
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X519
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.880

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