DRSC/TRiP Functional Genomics Resources

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Protein Alignment dlp and Gpc1

DIOPT Version :9

Sequence 1:NP_524071.2 Gene:dlp / 39596 FlyBaseID:FBgn0041604 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_110455.2 Gene:Gpc1 / 58920 RGDID:61853 Length:558 Species:Rattus norvegicus


Alignment Length:590 Identity:166/590 - (28%)
Similarity:263/590 - (44%) Gaps:111/590 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 APQVAALAAPNPAGGVAGSSIIDQFSPNCSAVTHIFQARGIDAIEIPQKPSNERVLRYCESPSVG 116
            |..:.|.|..:||..          |.:||.|..|:.|:|....::||...:...||.|  |...
  Rat    14 AAALVACARGDPASK----------SRSCSEVRQIYGAKGFSLSDVPQAEISGEHLRIC--PQGY 66

  Fly   117 TCCTYNMETRMAMQSRQQLEGHTKDQISRMSGILGSKATKFKDIFTALLKESRTQFNSMFIRTYG 181
            ||||..||..:|..||.:||....|....:...|.::.....|.|..||.:|.......|...:|
  Rat    67 TCCTSEMEENLANHSRMELETALHDSSRALQATLATQLHGIDDHFQRLLNDSERTLQDAFPGAFG 131

  Fly   182 VIYERNSYVFSDLFKELETYFANGRVDLLEVMDKFFNTLYQKMFTVLNTQYTFDENYMRCVSEHM 246
            .:|.:|:..|.||:.||..|:....:.|.|.:.:|:..|.:::|..|:.|....::|:.|:.:..
  Rat   132 DLYTQNTRAFRDLYAELRLYYRGANLHLEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQA 196

  Fly   247 KELKPFGDVPDKLSVQIKRSFVATRTYGQALTTASEVAKKVLNVRLNADCTGALTKMQHCGACKG 311
            :.|:||||.|.:|.::..|:|||.|::.|.|..||:|.:||..|.|..:|:.|:.|:.:|..|:|
  Rat   197 EALRPFGDAPRELRLRATRAFVAARSFVQGLGVASDVVRKVAQVPLAPECSRAVMKLVYCAHCRG 261

  Fly   312 YT-EKPCTNYCVNVIKGCLHYQHEFDSEWENFAMAMDKVAERLLGSFNIVMVVEPLNIKISEAIM 375
            .. .:||.:||.||:||||..|.:.|:||.|...:|..:.::..|......|:..:::.::|||.
  Rat   262 VPGARPCPDYCRNVLKGCLANQADLDAEWRNLLDSMVLITDKFWGPSGAENVIGSVHMWLAEAIN 326

  Fly   376 NFQDSGQDITNRVFQGCGRPKLKKMKRSISPKLQGVQILNARSPVEADTLDIDETLDEAIVLRER 440
            ..||:...:|.:|.||||.||       ::|...|        |.|                 :|
  Rat   327 ALQDNKDTLTAKVIQGCGNPK-------VNPHGSG--------PEE-----------------KR 359

  Fly   441 RAAEPGSQETSAQQSQEQGVGKSGNGGGGGGGNNRRQQQRRKQQQQRRKQQNNRDDNDDDDNESG 505
            |..:...||            ||..|                                       
  Rat   360 RRGKLALQE------------KSSTG--------------------------------------- 373

  Fly   506 GGREPILDRIVRDIRQRVKDYKKFWSNLPHSVCSNEDIASSSDVDGMCWNGHTIDRYMHSITTEH 570
                 .|:::|.:.:.:::|.:.:|.:||.::|| |.:|.|...|..||||.:..||:..:..:.
  Rat   374 -----TLEKLVSEAKAQLRDIQDYWISLPGTLCS-EKMAMSPASDDRCWNGISKGRYLPEVMGDG 432

  Fly   571 GSNPEFTGNPA----STKQTAQMASQLSHLKNAIVHLRNAYNGQDVEWSEQEELPYAGSGAGSGS 631
            .:|.  ..||.    .||....:..|:..||.....||.||.|.||::.:..:   .|||:|||.
  Rat   433 LANQ--INNPEVEVDITKPDMTIRQQIMQLKIMTNRLRGAYGGNDVDFQDASD---DGSGSGSGG 492

  Fly   632 GSEDD 636
            |..||
  Rat   493 GCPDD 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlpNP_524071.2 Glypican 79..613 CDD:279494 150/538 (28%)
Gpc1NP_110455.2 Glypican 22..539 CDD:395918 163/582 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 478..531 9/23 (39%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341709
Domainoid 1 1.000 283 1.000 Domainoid score I1563
eggNOG 1 0.900 - - E1_KOG3821
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 373 1.000 Inparanoid score I2042
OMA 1 1.010 - - QHG46379
OrthoDB 1 1.010 - - D275653at33208
OrthoFinder 1 1.000 - - FOG0000903
OrthoInspector 1 1.000 - - otm45892
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10822
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X519
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
1211.910

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