DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dlp and gpc5a

DIOPT Version :9

Sequence 1:NP_524071.2 Gene:dlp / 39596 FlyBaseID:FBgn0041604 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_001289165.1 Gene:gpc5a / 559454 ZFINID:ZDB-GENE-140106-260 Length:544 Species:Danio rerio


Alignment Length:592 Identity:136/592 - (22%)
Similarity:230/592 - (38%) Gaps:137/592 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 NCSAVTHIFQARGI-DAIEIPQKPSNERVLRYCESPSVGTCCTYNMETRMAMQSRQQLEGHTKDQ 142
            :|..|..:||.:.| .|..||..|.....|:.|.|.:: ||||..||.|..:.:|:.::...:..
Zfish    27 DCEEVRKVFQLKQIGPAKSIPDTPRTGSDLQVCLSRNL-TCCTKKMEERYQVAARRDIQNLLQIS 90

  Fly   143 ISRMSGILGSKATKFKDIFTALLKESRTQFNSMFIRTYGVIYERN--------SYVFSDLFKELE 199
            .|.:..:.......|::...:|::::..       .|..::::.:        |....:.|.|:.
Zfish    91 SSSLKFLFSRNVAAFQESVESLVRQAEN-------HTLSILHQSHRDLSSPAASAPVGEFFTEVA 148

  Fly   200 TYFANGRVDLLEVMDKFFNTLYQKMFTVLNTQYTFDENYMRCVSEHMKELKPFGDVPDKLSVQIK 264
            .:.....:.|.|....|||.|:..::..| ........|..|:....::|.|||..|.:|:.||.
Zfish   149 LFILGSELSLEESSQSFFNALFPLIYERL-IDSRLSPPYAECLRSSAQDLAPFGAAPIRLASQIA 212

  Fly   265 RSFVATRTYGQALTTASEVAKKVLNVRLNADCTGALTKMQHCGACKGYT-EKPCTNYCVNVIKGC 328
            .:.:..|.:.|||....|:.....:::|:.:|...|.:|.:|..|:..| .|||..||:||::||
Zfish   213 HASLPARVFLQALHLGIEIINTTDHIQLSRECRRGLLRMSYCPHCQALTSSKPCMGYCLNVVRGC 277

  Fly   329 LHYQHEFDSEWENFAMAMDKVAERLLGSFNIVMVVEPLNIKISEAIMNFQDSGQDITNRVFQGCG 393
            |....|.|:.|..|..:::.:|.|:.|..::..|:...:..:.:|:.:.|.|...|..:|.:.||
Zfish   278 LANLAEVDAHWREFVRSLETLAGRMHGELDLEQVLLGAHELVRDAVAHAQRSTARIHAQVQRVCG 342

  Fly   394 RPKLKKMKRSISPKLQGVQILNARSPVEADTLDIDETLDEAIVLRERRAAEPGSQETSAQQSQEQ 458
                 :..|...| :..||....|:             .::|.||                    
Zfish   343 -----QSSRWTEP-VNSVQHSTGRA-------------SDSIPLR-------------------- 368

  Fly   459 GVGKSGNGGGGGGGNNRRQQQRRKQQQQRRKQQNNRDDNDDDDNESGGGREPILDRIVRDIRQRV 523
                         |.||                 |.:|:              |.....:....:
Zfish   369 -------------GANR-----------------NTEDS--------------LSSRRTEFLHSL 389

  Fly   524 KDYKKFWSNLPHSVCSNEDIASSSDVDG-MCWNGHTIDRYMHSITTEHG-----SNPEFTGNPAS 582
            :.|:.|:..|...:|.:| :||:   || .||||..|.|........:|     .|||     ..
Zfish   390 RLYRTFYGALADQLCISE-LASA---DGRACWNGDDIARSYTLRVVGNGIKAQAENPE-----VK 445

  Fly   583 TKQTAQMASQ-LSHLKNAIVHLRNAYNGQDVEWSEQEELPYAGS------GAGSG-SGSEDDEDD 639
            .|:...:.:| :..||    |:.....|:.:        |..||      |:|.| ||..||||.
Zfish   446 VKEADPVINQVIDKLK----HINQLLQGRSI--------PKLGSLDQIETGSGDGNSGDCDDEDG 498

  Fly   640 DEGSGLG 646
            ..|||.|
Zfish   499 CWGSGNG 505

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlpNP_524071.2 Glypican 79..613 CDD:279494 120/550 (22%)
gpc5aNP_001289165.1 Glypican 28..515 CDD:279494 136/591 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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