DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dlp and Gpc4

DIOPT Version :9

Sequence 1:NP_524071.2 Gene:dlp / 39596 FlyBaseID:FBgn0041604 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_001014130.1 Gene:Gpc4 / 317322 RGDID:1359399 Length:557 Species:Rattus norvegicus


Alignment Length:650 Identity:211/650 - (32%)
Similarity:320/650 - (49%) Gaps:131/650 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 LLLLLLTTHLPPTLQADNGPAPQVAALAAPNPAGGVAGSSIIDQFSPNCSAVTHIFQARGIDAIE 96
            ||.||.|.            |...|:|.|..|.            |.:||.|..::.::|.:..:
  Rat     6 LLALLCTL------------AALSASLLAAEPK------------SKSCSEVRRLYVSKGFNKND 46

  Fly    97 IPQKPSNERVLRYCESPSVGTCCTYNMETRMAMQSRQQLEGHTKDQISRMSGILGSKATKFKDIF 161
            .|....|...|:.|....  |||:..||.:.::||:...:....:|.:.:..|..|:..||.:.|
  Rat    47 APLYEINGDHLKICSQDY--TCCSQEMEEKYSLQSKDDFQTVVSEQCNHLQAIFASRYKKFDEFF 109

  Fly   162 TALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVDLLEVMDKFFNTLYQKMFT 226
            ..||:.:....|.||::|||.:|.:||.:|.|||.||:.|:..|.|:|.|:::.|:..|.::||.
  Rat   110 KELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYVAGNVNLEEMLNDFWARLLERMFR 174

  Fly   227 VLNTQYTFDENYMRCVSEHMKELKPFGDVPDKLSVQIKRSFVATRTYGQALTTASEVAKKVLNVR 291
            ::|:||.|.:.|:.|||::.::||||||||.||.:|:.|:|||.||:.|.|..|.:|..:|..|.
  Rat   175 LVNSQYHFTDEYLECVSKYTEQLKPFGDVPRKLKLQVTRAFVAARTFAQGLAVARDVVNRVSVVN 239

  Fly   292 LNADCTGALTKMQHCGACKG-YTEKPCTNYCVNVIKGCLHYQHEFDSEWENFAMAMDKVAERLLG 355
            ..|.||.||.||.:|..|:| .|.|||.|||.|:::|||..|.:.|.||.||..||..|||||.|
  Rat   240 PTAQCTQALLKMIYCSHCRGLVTVKPCYNYCSNIMRGCLANQGDLDLEWNNFIDAMLMVAERLEG 304

  Fly   356 SFNIVMVVEPLNIKISEAIMNFQDSGQDITNRVFQGCGRPKLKKMKRSISPKLQGVQILNARSPV 420
            .|||..|::|:::|||:||||.||:...::.:||||||.||                      |:
  Rat   305 PFNIESVMDPIDVKISDAIMNMQDNSVQVSQKVFQGCGPPK----------------------PL 347

  Fly   421 EADTLDIDETLDEAIVLRERRAAEPGSQETSAQQSQEQGVGKSGNGGGGGGGNNRRQQQRRKQQQ 485
            .|..  |..::.|:......|...|..:.|:|       .|.|                      
  Rat   348 PAGR--ISRSISESAFSARFRPYHPEQRPTTA-------AGTS---------------------- 381

  Fly   486 QRRKQQNNRDDNDDDDNESGGGREPILDRIVRDIRQRVKDYKKFWSNLPHSVCSNEDIASSSDVD 550
                                      |||:|.|:::::|..|||||:||.:||::|.:|:.::.:
  Rat   382 --------------------------LDRLVTDVKEKLKQAKKFWSSLPSTVCNDERMAAGNENE 420

  Fly   551 GMCWNGHTIDRYMHSIT----TEHGSNPEFTGNPASTKQTAQMASQLSHLKNAIVHLRNAYNGQD 611
            ..||||.:..||:.::|    ...|:|||...:  ::|....:..|:..|:.....::|||||.|
  Rat   421 DDCWNGKSKSRYLFAVTGNGLANQGNNPEVQVD--TSKPDILILRQIMALRVMTSKMKNAYNGND 483

  Fly   612 VEWSEQEELPYAGSGAGSGSGSEDDEDDDEGSGLGPFE---PSHKPDVERPSVDADNDDDEDAGG 673
            |::.:..:   ..||.|||||.|..:...|      ||   ..|       |..:.|:..:.|||
  Rat   484 VDFFDISD---ESSGEGSGSGCEYQQCPSE------FEYNATDH-------SGKSANEKADSAGG 532

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlpNP_524071.2 Glypican 79..613 CDD:279494 182/538 (34%)
Gpc4NP_001014130.1 Glypican 24..552 CDD:279494 201/619 (32%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 283 1.000 Domainoid score I1563
eggNOG 1 0.900 - - E1_KOG3821
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H55582
Inparanoid 1 1.050 373 1.000 Inparanoid score I2042
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D275653at33208
OrthoFinder 1 1.000 - - FOG0000903
OrthoInspector 1 1.000 - - otm45892
orthoMCL 1 0.900 - - OOG6_105830
Panther 1 1.100 - - LDO PTHR10822
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X519
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1211.830

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