DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dlp and GPC1

DIOPT Version :9

Sequence 1:NP_524071.2 Gene:dlp / 39596 FlyBaseID:FBgn0041604 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_002072.2 Gene:GPC1 / 2817 HGNCID:4449 Length:558 Species:Homo sapiens


Alignment Length:590 Identity:164/590 - (27%)
Similarity:270/590 - (45%) Gaps:111/590 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    52 APQVAALAAPNPAGGVAGSSIIDQFSPNCSAVTHIFQARGIDAIEIPQKPSNERVLRYCESPSVG 116
            |..:.|.|..:||..          |.:|..|..|:.|:|....::||...:...||.|  |...
Human    14 AAALVACARGDPASK----------SRSCGEVRQIYGAKGFSLSDVPQAEISGEHLRIC--PQGY 66

  Fly   117 TCCTYNMETRMAMQSRQQLEGHTKDQISRMSGILGSKATKFKDIFTALLKESRTQFNSMFIRTYG 181
            ||||..||..:|.:|..:||...:|....:..:|.::...|.|.|..||.:|.....:.|...:|
Human    67 TCCTSEMEENLANRSHAELETALRDSSRVLQAMLATQLRSFDDHFQHLLNDSERTLQATFPGAFG 131

  Fly   182 VIYERNSYVFSDLFKELETYFANGRVDLLEVMDKFFNTLYQKMFTVLNTQYTFDENYMRCVSEHM 246
            .:|.:|:..|.||:.||..|:....:.|.|.:.:|:..|.:::|..|:.|....::|:.|:.:..
Human   132 ELYTQNARAFRDLYSELRLYYRGANLHLEETLAEFWARLLERLFKQLHPQLLLPDDYLDCLGKQA 196

  Fly   247 KELKPFGDVPDKLSVQIKRSFVATRTYGQALTTASEVAKKVLNVRLNADCTGALTKMQHCGACKG 311
            :.|:|||:.|.:|.::..|:|||.|::.|.|..||:|.:||..|.|..:|:.|:.|:.:|..|.|
Human   197 EALRPFGEAPRELRLRATRAFVAARSFVQGLGVASDVVRKVAQVPLGPECSRAVMKLVYCAHCLG 261

  Fly   312 YT-EKPCTNYCVNVIKGCLHYQHEFDSEWENFAMAMDKVAERLLGSFNIVMVVEPLNIKISEAIM 375
            .. .:||.:||.||:||||..|.:.|:||.|...:|..:.::..|:..:..|:..::..::|||.
Human   262 VPGARPCPDYCRNVLKGCLANQADLDAEWRNLLDSMVLITDKFWGTSGVESVIGSVHTWLAEAIN 326

  Fly   376 NFQDSGQDITNRVFQGCGRPKLKKMKRSISPKLQGVQILNARSPVEADTLDIDETLDEAIVLRER 440
            ..||:...:|.:|.||||.||       ::|  ||                              
Human   327 ALQDNRDTLTAKVIQGCGNPK-------VNP--QG------------------------------ 352

  Fly   441 RAAEPGSQETSAQQSQEQGVGKSGNGGGGGGGNNRRQQQRRKQQQQRRKQQNNRDDNDDDDNESG 505
                ||.:|                            ::||.:...|.:..:.            
Human   353 ----PGPEE----------------------------KRRRGKLAPRERPPSG------------ 373

  Fly   506 GGREPILDRIVRDIRQRVKDYKKFWSNLPHSVCSNEDIASSSDVDGMCWNGHTIDRYMHSI---- 566
                 .|:::|.:.:.:::|.:.||.:||.::|| |.:|.|:..|..||||....||:..:    
Human   374 -----TLEKLVSEAKAQLRDVQDFWISLPGTLCS-EKMALSTASDDRCWNGMARGRYLPEVMGDG 432

  Fly   567 TTEHGSNPEFTGNPASTKQTAQMASQLSHLKNAIVHLRNAYNGQDVEWSEQEELPYAGSGAGSGS 631
            .....:|||...:  .||....:..|:..||.....||:||||.||::.:..:   .|||:|||.
Human   433 LANQINNPEVEVD--ITKPDMTIRQQIMQLKIMTNRLRSAYNGNDVDFQDASD---DGSGSGSGD 492

  Fly   632 GSEDD 636
            |..||
Human   493 GCLDD 497

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlpNP_524071.2 Glypican 79..613 CDD:279494 148/538 (28%)
GPC1NP_002072.2 Glypican 22..533 CDD:366494 161/582 (28%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 341..374 15/120 (13%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 505..534
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C165147851
Domainoid 1 1.000 286 1.000 Domainoid score I1604
eggNOG 1 0.900 - - E1_KOG3821
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 373 1.000 Inparanoid score I2117
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG46379
OrthoDB 1 1.010 - - D275653at33208
OrthoFinder 1 1.000 - - FOG0000903
OrthoInspector 1 1.000 - - otm41759
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10822
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R3318
SonicParanoid 1 1.000 - - X519
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.900

Return to query results.
Submit another query.