DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dlp and GPC4

DIOPT Version :9

Sequence 1:NP_524071.2 Gene:dlp / 39596 FlyBaseID:FBgn0041604 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_001439.2 Gene:GPC4 / 2239 HGNCID:4452 Length:556 Species:Homo sapiens


Alignment Length:599 Identity:201/599 - (33%)
Similarity:307/599 - (51%) Gaps:99/599 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 SPNCSAVTHIFQARGIDAIEIPQKPSNERVLRYCESPSVGTCCTYNMETRMAMQSRQQLEGHTKD 141
            |.:||.|..::.::|.:..:.|....|...|:.|  |...|||:..||.:.::||:...:....:
Human    27 SKSCSEVRRLYVSKGFNKNDAPLHEINGDHLKIC--PQGSTCCSQEMEEKYSLQSKDDFKSVVSE 89

  Fly   142 QISRMSGILGSKATKFKDIFTALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGR 206
            |.:.:..:..|:..||.:.|..||:.:....|.||::|||.:|.:||.:|.|||.||:.|:..|.
Human    90 QCNHLQAVFASRYKKFDEFFKELLENAEKSLNDMFVKTYGHLYMQNSELFKDLFVELKRYYVVGN 154

  Fly   207 VDLLEVMDKFFNTLYQKMFTVLNTQYTFDENYMRCVSEHMKELKPFGDVPDKLSVQIKRSFVATR 271
            |:|.|:::.|:..|.::||.::|:||.|.:.|:.|||::.::||||||||.||.:|:.|:|||.|
Human   155 VNLEEMLNDFWARLLERMFRLVNSQYHFTDEYLECVSKYTEQLKPFGDVPRKLKLQVTRAFVAAR 219

  Fly   272 TYGQALTTASEVAKKVLNVRLNADCTGALTKMQHCGACKG-YTEKPCTNYCVNVIKGCLHYQHEF 335
            |:.|.|..|.:|..||..|...|.||.||.||.:|..|:| .|.|||.|||.|:::|||..|.:.
Human   220 TFAQGLAVAGDVVSKVSVVNPTAQCTHALLKMIYCSHCRGLVTVKPCYNYCSNIMRGCLANQGDL 284

  Fly   336 DSEWENFAMAMDKVAERLLGSFNIVMVVEPLNIKISEAIMNFQDSGQDITNRVFQGCGRPKLKKM 400
            |.||.||..||..|||||.|.|||..|::|:::|||:||||.||:...::.:||||||.||    
Human   285 DFEWNNFIDAMLMVAERLEGPFNIESVMDPIDVKISDAIMNMQDNSVQVSQKVFQGCGPPK---- 345

  Fly   401 KRSISPKLQGVQILNARSPVEADTLDIDETLDEAIVLRERRAAEPGSQETSAQQSQEQGVGKSGN 465
                              |:.|..  |..::.|:......|...|..:.|:|       .|.|  
Human   346 ------------------PLPAGR--ISRSISESAFSARFRPHHPEERPTTA-------AGTS-- 381

  Fly   466 GGGGGGGNNRRQQQRRKQQQQRRKQQNNRDDNDDDDNESGGGREPILDRIVRDIRQRVKDYKKFW 530
                                                          |||:|.|:::::|..||||
Human   382 ----------------------------------------------LDRLVTDVKEKLKQAKKFW 400

  Fly   531 SNLPHSVCSNEDIASSSDVDGMCWNGHTIDRYMHSIT----TEHGSNPEFTGNPASTKQTAQMAS 591
            |:||.:||::|.:|:.:..:..||||....||:.::|    ...|:|||...:  ::|....:..
Human   401 SSLPSNVCNDERMAAGNGNEDDCWNGKGKSRYLFAVTGNGLANQGNNPEVQVD--TSKPDILILR 463

  Fly   592 QLSHLKNAIVHLRNAYNGQDVEWSEQEELPYAGSGAGSGSG-------SEDDEDDDEGSGLGPFE 649
            |:..|:.....::|||||.||::.:..:   ..||.|||||       ||.|.:..:.:|....|
Human   464 QIMALRVMTSKMKNAYNGNDVDFFDISD---ESSGEGSGSGCEYQQCPSEFDYNATDHAGKSANE 525

  Fly   650 PSHKPDVERPSVDA 663
            .:....| ||...|
Human   526 KADSAGV-RPGAQA 538

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlpNP_524071.2 Glypican 79..613 CDD:279494 183/538 (34%)
GPC4NP_001439.2 Glypican 26..551 CDD:307347 201/599 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 286 1.000 Domainoid score I1604
eggNOG 1 0.900 - - E1_KOG3821
Hieranoid 00.000 Not matched by this tool.
Homologene 1 1.000 - - H55582
Inparanoid 1 1.050 373 1.000 Inparanoid score I2117
Isobase 1 0.950 - 0 Normalized mean entropy S6660
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D275653at33208
OrthoFinder 1 1.000 - - FOG0000903
OrthoInspector 1 1.000 - - otm41759
orthoMCL 1 0.900 - - OOG6_105830
Panther 1 1.100 - - LDO PTHR10822
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X519
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
User_Submission 00.000 Not matched by this tool.
1312.780

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