DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dlp and Gpc2

DIOPT Version :9

Sequence 1:NP_524071.2 Gene:dlp / 39596 FlyBaseID:FBgn0041604 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_612520.1 Gene:Gpc2 / 171517 RGDID:621363 Length:579 Species:Rattus norvegicus


Alignment Length:656 Identity:167/656 - (25%)
Similarity:270/656 - (41%) Gaps:130/656 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly    31 PLLLLLLTTHLPPTLQADNGPAPQVAALAAPNPAGGVAGSSIIDQFSPNCSAVTHIFQARGIDAI 95
            |||||||.  |.|      ||.|           |..:.:.::    .:|:....:..|||....
  Rat     6 PLLLLLLP--LCP------GPGP-----------GHGSEAKVV----RSCAETRQVLGARGYSLN 47

  Fly    96 EIPQKPSNERVLRYCESPSVGTCCTYNMETRMAMQSRQQLEGHTKDQISRMSGILGSKATKFKDI 160
            .||....:...|:.|  |...|||:...|.::...:.....|..:|..|.:...|.::..||.:.
  Rat    48 LIPPSLISGEHLQIC--PQEYTCCSSETEQKLIRDAEVTFRGLVEDSGSFLIHTLAARHRKFNEF 110

  Fly   161 FTALLKESRTQFNSMFIRTYGVIYERNSYVFSDLFKELETYFANGRVDLLEVMDKFFNTLYQKMF 225
            |..:|..|:.....:|..:||.:|.:::.:|:.||..|..|:......|.:.:..|:..|.::.|
  Rat   111 FREMLSISQHSLAQLFSHSYGRLYSQHAVIFNSLFSGLRDYYEKSGEGLDDTLADFWAQLLERAF 175

  Fly   226 TVLNTQYTFDENYMRCVSEHMK----ELKPFGDVPDKLSVQIKRSFVATRTYGQALTTASEVAKK 286
            .:|:.||:|..:::.|::....    .|:||||.|.:|.:||.|:.||.|...|.|.|...|..:
  Rat   176 PLLHPQYSFPPDFLLCLTRLTSTADGSLQPFGDSPRRLRLQITRALVAARALVQGLETGRNVVSE 240

  Fly   287 VLNVRLNADCTGALTKMQHCGACKGYTE-KPCTNYCVNVIKGCLHYQHEFDSEWENFAMAMDKVA 350
            .|.|.:...|..||.::..|..|:|... .||..:|:||..|||. ....:.||..:...:..:|
  Rat   241 ALKVPMLEGCRQALMRLIGCPLCRGVPSLMPCRGFCLNVAHGCLS-SRGLEPEWGGYLDGLLLLA 304

  Fly   351 ERLLGSFNIVMVVEPLNIKISEAIMNFQDSGQDITNRVFQGCGRPKLKKMKRSISPKLQGVQILN 415
            |:|.|.|:..:..|.:.:||||.:|:.|::...::.:|||.||.|                    
  Rat   305 EKLQGPFSFELAAESIGVKISEGLMHLQENSVKVSAKVFQECGTP-------------------- 349

  Fly   416 ARSPVEADTLDIDETLDEAIVLRERRAAEPGSQETSAQQSQEQGVGKSGNGGGGGGGNNRRQQQR 480
              .||::               |.|||..| .:|||                             
  Rat   350 --HPVQS---------------RNRRAPAP-REETS----------------------------- 367

  Fly   481 RKQQQQRRKQQNNRDDNDDDDNESGGGREPILDRIVRDIRQRVKDYKKFWSNLPHSVCSNEDIAS 545
                      ::.|...:::...:..|..  |.|:|.::|:|:...:.||:.||.:||.:..:|:
  Rat   368 ----------RSWRSSAEEERPTTAAGTN--LHRLVWELRERLSRVRGFWAGLPVTVCGDSRMAA 420

  Fly   546 S-SDVDGMCWNGHTIDRYMHSIT----TEHGSNPEF-TGNPASTKQTAQMASQLSHLKNAIVHLR 604
            . |.....||.|....|||..:.    .|...|||. |.:|....:..::     ||:.|...::
  Rat   421 DLSQEAAPCWTGVGRGRYMSPVVVGSLNEQLHNPELDTSSPDVPTRRRRL-----HLRAATARMK 480

  Fly   605 NAYNGQDVEWSEQEELPYAGSGAGSGSGSEDDEDDDEGSGLGPFEPSHKPDVERPSVDADNDDDE 669
            .|..|||::..:.:|       ..||||......||..:|..|..|..:|  .||......|...
  Rat   481 AAALGQDLDMHDADE-------DASGSGGGQQYADDWKAGAAPVVPPARP--PRPPRPPRRDGLG 536

  Fly   670 DAGGRG 675
            ..||.|
  Rat   537 VRGGSG 542

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlpNP_524071.2 Glypican 79..613 CDD:279494 137/544 (25%)
Gpc2NP_612520.1 Glypican 22..565 CDD:279494 154/621 (25%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 347..382 13/111 (12%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 483..552 20/69 (29%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166341710
Domainoid 1 1.000 283 1.000 Domainoid score I1563
eggNOG 1 0.900 - - E1_KOG3821
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 373 1.000 Inparanoid score I2042
OMA 1 1.010 - - QHG46379
OrthoDB 1 1.010 - - D275653at33208
OrthoFinder 1 1.000 - - FOG0000903
OrthoInspector 1 1.000 - - otm45892
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10822
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X519
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
1312.870

Return to query results.
Submit another query.