DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment dlp and Gpc3

DIOPT Version :9

Sequence 1:NP_524071.2 Gene:dlp / 39596 FlyBaseID:FBgn0041604 Length:765 Species:Drosophila melanogaster
Sequence 2:NP_057906.2 Gene:Gpc3 / 14734 MGIID:104903 Length:579 Species:Mus musculus


Alignment Length:595 Identity:125/595 - (21%)
Similarity:232/595 - (38%) Gaps:124/595 - (20%)


- Green bases have known domain annotations that are detailed below.


  Fly    69 GSSIIDQFSP------NCSAVTHIFQARGIDAIEIPQKPSNERVLRYCESPSVGTCCTYNMETRM 127
            |...:.|..|      .|..|...||........:|:.|.....|:.| .|...|||:..||.:.
Mouse    17 GLGCLGQAQPPPPPDATCHQVRSFFQRLQPGLKWVPETPVPGSDLQVC-LPKGPTCCSRKMEEKY 80

  Fly   128 AMQSRQQLEGHTKDQISRMSGILGSKATKFKDIFTALLKESRTQFNSMFIRTYGVIYERNSYVFS 192
            .:.:|..:|...:.....:..::...|..|::.|..:::.::...|:||...|..:..:......
Mouse    81 QLTARLNMEQLLQSASMELKFLIIQNAAVFQEAFEIVVRHAKNYTNAMFKNNYPSLTPQAFEFVG 145

  Fly   193 DLFKELETYFANGRVDLLEVMDKFFNTLYQKMFTVLNTQY--------TFDENYMRCVSEHMKEL 249
            :.|.::..|.....::    :|...|.|:..:|.|:.||.        ..|.|  .|:....::|
Mouse   146 EFFTDVSLYILGSDIN----VDDMVNELFDSLFPVIYTQMMNPGLPESVLDIN--ECLRGARRDL 204

  Fly   250 KPFGDVPDKLSVQIKRSFVATRTYGQALTTASEVAKKVLNVRLNADCTGALTKMQHCGACKG-YT 313
            |.||..|..:..|:.:|...||.:.|||....||.....:::.:.||...||:|.:|..|:| ..
Mouse   205 KVFGSFPKLIMTQVSKSLQVTRIFLQALNLGIEVINTTDHLKFSKDCGRMLTRMWYCSYCQGLMM 269

  Fly   314 EKPCTNYCVNVIKGCLHYQHEFDSEWENFAMAMDKVAERLLGSFNIVMVVEPLNIKISEAIMNFQ 378
            .|||..||..|::||:....|.|..|..:.::::::...:...:::..|:..|...|.::|...|
Mouse   270 VKPCGGYCNVVMQGCMAGVVEIDKYWREYILSLEELVNGMYRIYDMENVLLGLFSTIHDSIQYVQ 334

  Fly   379 DSGQDITNRVFQGCGRPKLKKMKRSISPKLQGVQILNARSPVEADTLDIDETLDEAIVLRERRAA 443
            .:|..:|..:.:.|...:.::.:.:..|:                    |..:|:.|:    :.|
Mouse   335 KNGGKLTTTIGKLCAHSQQRQYRSAYYPE--------------------DLFIDKKIL----KVA 375

  Fly   444 EPGSQETSAQQSQEQGVGKSGNGGGGGGGNNRRQQQRRKQQQQRRKQQNNRDDNDDDDNESGGGR 508
            ....:||.                     ::||                                
Mouse   376 HVEHEETL---------------------SSRR-------------------------------- 387

  Fly   509 EPILDRIVRDIRQRVKDYKKFWSNLPHSVCSNEDIASSSDVDGMCWNG-HTIDRYMHSITTEHGS 572
                    |::.|::|.:..|:|.||..:||:..:|.:   |.:|||| ..::||... ...:|.
Mouse   388 --------RELIQKLKSFINFYSALPGYICSHSPVAEN---DTLCWNGQELVERYSQK-AARNGM 440

  Fly   573 NPEFTGNPASTK----QTAQMASQLSHLKNAIVHLRNAYNGQDVEWSEQEELPYAGSGAGSGSGS 633
            ..:|..:....|    ..:|:..:|.|: |.::...:...|:.::.|..||      |..||. .
Mouse   441 KNQFNLHELKMKGPEPVVSQIIDKLKHI-NQLLRTMSVPKGKVLDKSLDEE------GLESGD-C 497

  Fly   634 EDDEDDDEGS 643
            .||||:..||
Mouse   498 GDDEDECIGS 507

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
dlpNP_524071.2 Glypican 79..613 CDD:279494 110/547 (20%)
Gpc3NP_057906.2 Glypican 14..576 CDD:279494 125/595 (21%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 533..552
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG3821
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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