DRSC/TRiP Functional Genomics Resources

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Protein Alignment RecQ5 and RECQSIM

DIOPT Version :10

Sequence 1:NP_729983.1 Gene:RecQ5 / 39594 FlyBaseID:FBgn0027375 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_568499.1 Gene:RECQSIM / 832830 AraportID:AT5G27680 Length:858 Species:Arabidopsis thaliana


Alignment Length:802 Identity:206/802 - (25%)
Similarity:322/802 - (40%) Gaps:216/802 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly     4 ESAVHEALKKHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSENQITIVF 68
            |..|:..|:..||.|..:| .|.:|:...|..| |..|...||||||||||:|.|:: .::.:|.
plant   153 EKRVNSILRNRFGISSLRS-FQREALSTWVAHK-DCLVLAATGSGKSLCFQIPALLT-GKVVVVI 214

  Fly    69 SPLLALIKDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYITPEQAATKFFQDL 133
            |||::|:.||...|::.||.|..|.|    .:.|..|.: ||::...:.:|:.|| ...:..:. 
plant   215 SPLISLMHDQCLKLSRHKVSACFLGS----GQLDNCIEE-KAMQGMYQIIYVCPE-TVVRLIKP- 272

  Fly   134 LQTLHKHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYS---------DVIWLALTATASR 189
            ||.|.|.:.:|.||:|||||||:|||||||.|.||..||..:.         ||..:||||||:.
plant   273 LQKLAKTHGIALFAIDEAHCVSKWGHDFRPHYRKLSVLRENFCASNLEFLEYDVPIMALTATATV 337

  Fly   190 EVKEDIYKQLRLHQPVAQFSTPSFRKNLFYDI-----VYKNSIEDDFQHL--------------- 234
            .|:|||.:.|.|.:......|..||.||.:.:     .:.:|...|||:|               
plant   338 NVQEDILESLHLSKETKIVLTSFFRPNLQFSVKHSRTKFASSYAKDFQNLVDLYSEKKNSTGKKL 402

  Fly   235 ----------ADFARH------------------------------------------------- 240
                      .||..|                                                 
plant   403 AVISRESEEQTDFGSHDSENIHETDYDEDEEDQENSLAKKNSSNGKELSEAYLEDETDIFQSVDD 467

  Fly   241 --------CLGNPKEFKDTPKPQ------RGCGIVYCRTRDQVERMAIGVTKQGIGAVAYHAGLK 291
                    |.....|..:.|.|.      .|..|:|..||.:...:|..:...|:.|.||:|.|.
plant   468 WDVACGEFCAMPSCELLEIPVPSEKQKDLEGLTIIYVPTRKESVNIAKYLCGVGLKAAAYNASLP 532

  Fly   292 TGERTEVQEAWMRGDQPIICATNSFGMGVDKPSVRFVIHWDVPQNVAAYYQESGRAGRDGLQSYC 356
            .....:|.:.:......::.||.:||||:||.:||.:||:...|::.|||||:|||||||..:.|
plant   533 KKHLRQVHQDFHDNKLQVVVATIAFGMGIDKKNVRKIIHYGWLQSLEAYYQEAGRAGRDGELAEC 597

  Fly   357 RLYYGREDVRSIRFLLQNDAHRARGRGDKELLTERAIKQFEKITEFCERTT-CRHKLFSDFFGD- 419
            .||   .|:.....||.:       |..|| .||:|.|.......:...|: ||.|:..::||: 
plant   598 VLY---ADLSRAPTLLPS-------RRSKE-QTEQAYKMLSDCFRYGMNTSQCRAKILVEYFGEE 651

  Fly   420 -PTPDCSGQCDVC-KRPKK----AEKALEIFHRLCMDDAFKSHISLQDCADLYEGGRPGIKRAAQ 478
             .:..|: .|||| :.|.:    .|:|..:|..:   .||  |:.:.:                 
plant   652 FSSKKCN-SCDVCTEGPPELVDVREEANLLFQVI---TAF--HLQVDN----------------- 693

  Fly   479 EYAGGESGSDDDSGQSHSSMAKRAKKESQDFIKQQFNLRKQISAARQLEQETIAQISRVRMAEAT 543
               ..|....:|.|..:|...|.:.|.:..|...:  ||:|....::.:......::|:..||..
plant   694 ---DSEHAPYEDYGLGNSKQNKLSHKPNLLFFISK--LREQCEKFKETDCLWWKGLARIMEAEGY 753

  Fly   544 EKKIAGLQATHREKYLTALIDALKANVDKCKDEPGQQPKSVLKYNDYEAMSVNMEYDVFRQNKVA 608
            .|::.........|::                :|.::.|..|.:.|.:.:.|..|.|:...    
plant   754 IKEMDNKDRRVEIKFI----------------QPTEKGKKQLDFQDDKPLYVYPEADMLLS---- 798

  Fly   609 NMYRHALVKEISTIKKLTEQTKLLPLLVDYIPKPETSSKGAWTGGSVAYFERKLKELEEQRPQSL 673
                   :|:..|....:|..|                  .|....:   .|:..|..|::|:  
plant   799 -------LKQDRTYSGFSEWGK------------------GWADPEI---RRQRLERRERKPR-- 833

  Fly   674 KEVPKALKDRKGFKQENSKQTS 695
                   ::||..|:....::|
plant   834 -------RERKPRKKRTRGRSS 848

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RecQ5NP_729983.1 RecQ 5..447 CDD:440280 167/551 (30%)
SMC_N 658..>963 CDD:481474 8/38 (21%)
RECQSIMNP_568499.1 UBA_like_SF 8..42 CDD:473871
RecQ 155..684 CDD:440280 167/550 (30%)
Blue background indicates that the domain is not in the aligned region.

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