DRSC/TRiP Functional Genomics Resources

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Protein Alignment RecQ5 and RecQl3

DIOPT Version :9

Sequence 1:NP_729983.1 Gene:RecQ5 / 39594 FlyBaseID:FBgn0027375 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_195299.2 Gene:RecQl3 / 829727 AraportID:AT4G35740 Length:713 Species:Arabidopsis thaliana


Alignment Length:762 Identity:223/762 - (29%)
Similarity:388/762 - (50%) Gaps:93/762 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MAHESAVHEALKKHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSENQIT 65
            :|.:.|:.:.|:.||||:.|:.. |.:|:: ||...:|.:..||||.|||:|:|:|.| ::..|.
plant    18 VAGKEALVKLLRWHFGHADFRGK-QLEAIQ-AVVSGRDCFCLMPTGGGKSICYQIPAL-AKPGIV 79

  Fly    66 IVFSPLLALIKDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYITPEQAATKFF 130
            :|.|||:||:::|:..|.:..:.|:.|:|..:|..::::..||.:.:.:::.||:|||..|||.|
plant    80 LVVSPLIALMENQVMALKEKGIAAEYLSSTQATHVKNKIHEDLDSGKPSVRLLYVTPELIATKGF 144

  Fly   131 QDLLQTLHKHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWLALTATASREVKEDI 195
            ...|:.||....|...|:|||||:|.|||||||.|.:|..||...:||..|||||||:.:|::|:
plant   145 MLKLRKLHSRGLLNLIAIDEAHCISSWGHDFRPSYRQLSTLRDSLADVPVLALTATAAPKVQKDV 209

  Fly   196 YKQLRLHQPVAQFSTPSF-RKNLFYDIVYKNSIEDDFQHLADFARHCLGNPKEFKDTPKPQRGCG 259
            ...|.|..|:...|  || |.|:||::.||:.:::.:..|.:..:.| ||.            |.
plant   210 IDSLNLRNPLVLKS--SFNRPNIFYEVRYKDLLDNAYTDLGNLLKSC-GNI------------CA 259

  Fly   260 IVYCRTRDQVERMAIGVTKQGIGAVAYHAGLKTGERTEVQEAWMRGDQPIICATNSFGMGVDKPS 324
            |:||..|...:.:::.::..||.:.||||||.:..|:.|.:.|:...:.||.||.:||||:||..
plant   260 IIYCLERTTCDDLSVHLSSIGISSAAYHAGLNSKMRSTVLDDWLSSKKQIIVATVAFGMGIDKKD 324

  Fly   325 VRFVIHWDVPQNVAAYYQESGRAGRDGLQSYCRLYYGREDVRSIRFLLQNDAHRARGRGDKELLT 389
            ||.|.|:::|:::.::||||||||||.|.|...||||.:|.:.:.:||:|..::      |...:
plant   325 VRMVCHFNIPKSMESFYQESGRAGRDQLPSRSVLYYGVDDRKKMEYLLRNSENK------KSSSS 383

  Fly   390 ERAIKQFEKITEFCERTTCRHKLFSDFFGD--PTPDCSGQCDVCKRPKKAEKALEIFHRLCMDDA 452
            ::....||:|..:||.:.||.|...:.||:  |...|...||.||.|.:....||..    |..|
plant   384 KKPTSDFEQIVTYCEGSGCRRKKILESFGEEFPVQQCKKTCDACKHPNQVAHCLEEL----MTTA 444

  Fly   453 FKSHISLQDCADLY---EGGRPGIKRAAQEYAGGESGSDDDSGQSHSSMA-KRAKKESQDFIKQQ 513
            .:.|.|    :.::   ...:....:.::.:...|.||:.:...|.|..| :.|...:...:.::
plant   445 SRRHNS----SRIFITSSNNKTNEGQYSEFWNRNEDGSNSNEEISDSDDATEAANSVTGPKLSKK 505

  Fly   514 FNLRKQISAARQLEQETIAQISRVRMAEATEKKIAGLQATHREKYLTALIDALK--ANVDKCKDE 576
            ..|.:::....|.|::...:..:|:.:|......| |:.:.:::.|.||...|:  |.|::...:
plant   506 LGLDEKLVLLEQAEEKYYERNKQVKKSEKNAISEA-LRDSSKQRLLDALTRVLQLLACVEEIDSQ 569

  Fly   577 PGQQPKSVLKYNDYEAMSVNMEYDVFRQNKVANMYRHALVKEISTIKKLTEQTKLLPLLVDYIPK 641
            .|.:......|..|.....:..|     :::|     :.|:.:.|..:....|:|          
plant   570 KGSEFLENECYRKYSKAGKSFYY-----SQIA-----STVRWLGTASRDELMTRL---------- 614

  Fly   642 PETSSKGAWTGGSVAYFERKLKELEEQRPQSLKEVPKALKDRKGFKQENSKQTSISSFFKKEIKE 706
                       .||....|:.:.|||  |....|..:.:::     :::.|..::.|...:..:|
plant   615 -----------SSVVSLAREQEPLEE--PLLATEPVENIEE-----EDDGKTNTVESRVDEPTQE 661

  Fly   707 ---EPIDSPIQEERVNIKSEQMDLEESTPKDIASNHVKEESVTPESS 750
               .||.|||:..:|...||.::..:          :|:.::..:||
plant   662 LVVSPILSPIRLPQVPSFSEFVNRRK----------IKQNTLIDKSS 698

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RecQ5NP_729983.1 RecQ 6..>442 CDD:223588 165/438 (38%)
DEAD 37..193 CDD:278688 68/155 (44%)
HELICc <257..359 CDD:238034 43/101 (43%)
RecQ_Zn_bind 364..431 CDD:292742 19/68 (28%)
RecQl3NP_195299.2 DEXDc 32..235 CDD:214692 87/207 (42%)
DEAD 41..207 CDD:278688 72/167 (43%)
HELICc 229..359 CDD:238034 52/142 (37%)
RecQ_Zn_bind 364..427 CDD:292742 19/68 (28%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0514
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 309 1.000 Inparanoid score I742
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D445763at2759
OrthoFinder 1 1.000 - - FOG0006219
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 1 0.900 - - OOG6_105167
Panther 1 1.100 - - LDO PTHR13710
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4493
SwiftOrtho 1 1.000 - -
TreeFam 1 0.960 - -
109.830

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