DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RecQ5 and rqh1

DIOPT Version :9

Sequence 1:NP_729983.1 Gene:RecQ5 / 39594 FlyBaseID:FBgn0027375 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_593092.1 Gene:rqh1 / 2541620 PomBaseID:SPAC2G11.12 Length:1328 Species:Schizosaccharomyces pombe


Alignment Length:902 Identity:271/902 - (30%)
Similarity:419/902 - (46%) Gaps:165/902 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    13 KHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLM---SENQITIVFSPLLAL 74
            ||..|.|.....|.:|:...:..| ||::.||||.|||||:|||.::   :...:|:|.||||:|
pombe   512 KHKFHLKGFRKNQLEAINGTLSGK-DVFILMPTGGGKSLCYQLPAVIEGGASRGVTLVISPLLSL 575

  Fly    75 IKDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYITPEQAATK-FFQDLLQTLH 138
            ::||:|||.||.:|:..|:.:....||.:||..|.|....:|.||:|||..|:. ....:|::|:
pombe   576 MQDQLDHLRKLNIPSLPLSGEQPADERRQVISFLMAKNVLVKLLYVTPEGLASNGAITRVLKSLY 640

  Fly   139 KHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWLALTATASREVKEDIYKQLRLHQ 203
            :...||...:|||||||.|||||||||.:||.||.:|..:.::||||||:..||:||...||:..
pombe   641 ERKLLARIVIDEAHCVSHWGHDFRPDYKQLGLLRDRYQGIPFMALTATANEIVKKDIINTLRMEN 705

  Fly   204 PVAQFSTPSF-RKNLFYDIVYKNSIEDDFQHLADFARHCLGNPKEFKDTPKPQRGCGIVYCRTRD 267
            .:...|  || |.||||:|..|   :|.:..|..|..:  |:..|          .||:||.:|.
pombe   706 CLELKS--SFNRPNLFYEIKPK---KDLYTELYRFISN--GHLHE----------SGIIYCLSRT 753

  Fly   268 QVERMAIGVTKQ-GIGAVAYHAGLKTGERTEVQEAWMRGDQPIICATNSFGMGVDKPSVRFVIHW 331
            ..|::|..:... |:.|..|||||:..||..:|..|..|...||.||.:|||||||..||||||.
pombe   754 SCEQVAAKLRNDYGLKAWHYHAGLEKVERQRIQNEWQSGSYKIIVATIAFGMGVDKGDVRFVIHH 818

  Fly   332 DVPQNVAAYYQESGRAGRDGLQSYCRLYYGREDVRSIRFLLQNDAHRARGRGDKELLTERAIKQF 396
            ..|:::..||||:|||||||..::|.::|..:|..:.:.|:.:      |.||.| ..||..:..
pombe   819 SFPKSLEGYYQETGRAGRDGKPAHCIMFYSYKDHVTFQKLIMS------GDGDAE-TKERQRQML 876

  Fly   397 EKITEFCE-RTTCRHKLFSDFFGD--PTPDCSGQCDVCKRPKKAEKALEI--------FHRLCMD 450
            .::.:||| :|.||.|....:||:  ....|...||:|     .|:|..|        ...:.:.
pombe   877 RQVIQFCENKTDCRRKQVLAYFGENFDKVHCRKGCDIC-----CEEATYIKQDMTEFSLQAIKLL 936

  Fly   451 DAFKSHISLQDCADLYEGGRPGIKRAAQEYAGGESGSDDDSGQSHSSMAKRAKKE-------SQD 508
            .:.....:|....|::.|     .::|:..   |:|.|...|.....:..|...|       |:.
pombe   937 KSISGKATLLQLMDIFRG-----SKSAKIV---ENGWDRLEGAGVGKLLNRGDSERLFHHLVSEG 993

  Fly   509 -FI-KQQFNLRKQISA----ARQ-LEQETIAQISRV--RMAEATEKKIAGLQATHREKYLTAL-- 562
             |: |.:.|.|..:||    .|| :....:|...|:  .:.|::.|.....::..|.|.|.||  
pombe   994 VFVEKVEANRRGFVSAYVVPGRQTIINSVLAGKRRIILDVKESSSKPDTSSRSLSRSKTLPALRE 1058

  Fly   563 --IDALKANVDKCK------DE------PGQQPKSVLKYN--DYEAMSVNMEYDVFRQNKVANMY 611
              :.:..|:|| |.      ||      |..:|..:...|  |.|.:|         ..|..:.|
pombe  1059 YQLKSTTASVD-CSIGTREVDEIYDSQMPPVKPSLIHSRNKIDLEELS---------GQKFMSEY 1113

  Fly   612 RHALVKEISTIKKLTEQTKLLPLLVDYIPKPETSSKGAWTGGSVAYF-ERKLKELEEQRPQSLKE 675
                  ||..:.:..:..|||...:..|.....||          || :..|..:.::.|:::||
pombe  1114 ------EIDVMTRCLKDLKLLRSNLMAIDDSRVSS----------YFTDSVLLSMAKKLPRNVKE 1162

  Fly   676 VPKALKDRKGFKQENSKQTSISSFFKKEIKEEPIDSPIQEERVNIKSEQMD-----LEESTPKDI 735
                ||:..|.  .|.|..::...|.:.|::.     |.|:..|::..::|     |:...|.|.
pombe  1163 ----LKEIHGV--SNEKAVNLGPKFLQVIQKF-----IDEKEQNLEGTELDPSLQSLDTDYPIDT 1216

  Fly   736 ASNHVKEESVTPESSSSDRELELQPDSIIGERKFKLMSNGDGSYDTHRRKRVSHE-----TQ--- 792
            .:..:..|    :..|.|.:...:|.|.|.|        ||...|..|:..::..     ||   
pombe  1217 NALSLDHE----QGFSDDSDSVYEPSSPIEE--------GDEEVDGQRKDILNFMNSQSLTQTGS 1269

  Fly   793 -PKEKESIKTK--SSMQHLFGS--------FKSESEESNQSLNGFKTA--RQMLEEN 836
             ||.|.:..|:  .|.:|..||        :.:..::|.::.....|:  ..|:::|
pombe  1270 VPKRKSTSYTRPSKSYRHKRGSTSYSRKRKYSTSQKDSRKTSKSANTSFIHPMVKQN 1326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RecQ5NP_729983.1 RecQ 6..>442 CDD:223588 175/437 (40%)
DEAD 37..193 CDD:278688 75/159 (47%)
HELICc <257..359 CDD:238034 49/102 (48%)
RecQ_Zn_bind 364..431 CDD:292742 20/69 (29%)
rqh1NP_593092.1 RecQ 506..1191 CDD:223588 240/753 (32%)
DEAD 521..695 CDD:278688 78/174 (45%)
HELICc 717..846 CDD:238034 60/143 (42%)
RecQ_Zn_bind 851..914 CDD:292742 20/69 (29%)
RQC 919..1033 CDD:286470 22/121 (18%)
HRDC 1115..1195 CDD:128635 22/100 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0514
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R580
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.840

Return to query results.
Submit another query.