DRSC/TRiP Functional Genomics Resources

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Protein Alignment RecQ5 and K02F3.12

DIOPT Version :10

Sequence 1:NP_729983.1 Gene:RecQ5 / 39594 FlyBaseID:FBgn0027375 Length:1058 Species:Drosophila melanogaster
Sequence 2:NP_001022656.1 Gene:K02F3.12 / 175246 WormBaseID:WBGene00019334 Length:631 Species:Caenorhabditis elegans


Alignment Length:509 Identity:163/509 - (32%)
Similarity:251/509 - (49%) Gaps:64/509 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    11 LKKHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSENQITIVFSPLLALI 75
            ||:.|...||: .||..|:. ||..|:|..|.:.||.|||||:|||.|:: |.:.:|.|||::|:
 Worm   101 LKEQFHLEKFR-PLQRAAIN-AVMSKEDAVVILSTGGGKSLCYQLPALLA-NGLALVVSPLISLV 162

  Fly    76 KDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYITPEQAATKFFQDLLQTLHKH 140
            :|||..|..|.:.:.|||:..|.:|..||...:....:..:.||:|||:.|..  :.::..|.|.
 Worm   163 EDQILQLRSLGIDSSSLNANTSKEEAKRVEDAITNKDSKFRLLYVTPEKLAKS--KKMMNKLEKS 225

  Fly   141 NKLAY---FAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWLALTATASREVKEDIYKQLRLH 202
            ..:.:   .|:||.||.||||||||.||..|..|:.::..|..|.|||||:..|.:|:...|.: 
 Worm   226 LSVGFLKLIAIDEVHCCSQWGHDFRTDYSFLNVLKRQFKGVPILGLTATATSNVLDDVKDMLGI- 289

  Fly   203 QPVAQFSTPSFRKNLFYDIVYKNSIEDD-FQHLA-----DFARHCLGNPKEFKDTPKPQRGCGIV 261
            |....|.....|.||.|.:|.|...||: .:.:|     |||..                 .||:
 Worm   290 QAALTFRAGFNRSNLKYKVVQKPGSEDECTEEIAKTIKRDFAGQ-----------------TGII 337

  Fly   262 YCRTRDQVERMAIGVTKQGIGAVAYHAGLKTGERTEVQEAWMRGDQPIICATNSFGMGVDKPSVR 326
            ||.:|:..|::|..:...||.|..|||.::..:|:...:.|:.|...:|.||.:||||:|||:||
 Worm   338 YCLSRNDCEKVAKALKSHGIKAKHYHAYMEPVDRSGAHQGWISGKIQVIVATVAFGMGIDKPNVR 402

  Fly   327 FVIHWDVPQNVAAYYQESGRAGRDGLQSYCRLYYGREDVRSIRFLLQNDAHRARGRGDKELLTER 391
            ||||..:|:::..||||||||||||..:.|.|||...|:.....::|.:.     .|.:.|    
 Worm   403 FVIHHSLPKSIENYYQESGRAGRDGQPATCILYYRLADIFKQSSMVQQER-----TGIQNL---- 458

  Fly   392 AIKQFEKITEFCERTTCRHKLFSDFFGDP-TPD-CSGQCDVCKRPKKAEKALEIFHRLCMDDAFK 454
                :..:....:.:|||....::.|.:. .|. |..|||.|:.                .:.|.
 Worm   459 ----YNMVRYAADSSTCRRVKLAEHFEEAWEPSWCQKQCDTCEN----------------GNGFV 503

  Fly   455 SHISLQDCADLYEGGRPGIKRAAQEYAGGESGSDDDSGQSHSSMAKRAKKESQD 508
            . .|.::..|:.|..:..::...:.....:.||...:|.....:..:..|.|::
 Worm   504 G-TSSKESTDVSEAAKTTVRIIEEHLNSAKDGSGRITGNKLVELLTKKLKGSRN 556

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RecQ5NP_729983.1 RecQ 5..447 CDD:440280 154/446 (35%)
SMC_N 658..>963 CDD:481474
K02F3.12NP_001022656.1 Spc7 <25..110 CDD:197874 3/8 (38%)
RecQ 94..518 CDD:440280 158/469 (34%)
Blue background indicates that the domain is not in the aligned region.

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