DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment RecQ5 and recql5

DIOPT Version :9

Sequence 1:NP_729983.1 Gene:RecQ5 / 39594 FlyBaseID:FBgn0027375 Length:1058 Species:Drosophila melanogaster
Sequence 2:XP_031749855.1 Gene:recql5 / 100216093 XenbaseID:XB-GENE-958080 Length:1071 Species:Xenopus tropicalis


Alignment Length:1126 Identity:366/1126 - (32%)
Similarity:542/1126 - (48%) Gaps:249/1126 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly     7 VHEALKKHFGHSKFKSDLQEKAVKCAVKKKQDVYVSMPTGSGKSLCFQLPGLMSENQITIVFSPL 71
            :...||..||.:.|:|||||.|.:..||.:.||:|.||||:|||||:|||.::|.. ||:|.|||
 Frog    38 IQTTLKNVFGFNSFRSDLQENATRAVVKGETDVFVVMPTGAGKSLCYQLPAVLSVG-ITVVISPL 101

  Fly    72 LALIKDQIDHLTKLKVPADSLNSKMSTKERDRVIMDLKAVRTNLKFLYITPEQAATKFFQDLLQT 136
            :|||:||:|||..||:.|.|||||:...||.::|.||::....:|.||||||.||:..||.:|..
 Frog   102 IALIQDQVDHLVALKIKACSLNSKLPLPERKKIIQDLESEAPQIKLLYITPEMAASASFQPILAQ 166

  Fly   137 LHKHNKLAYFAVDEAHCVSQWGHDFRPDYLKLGELRSKYSDVIWLALTATASREVKEDIYKQLRL 201
            |...:.|:|..:|||||||:||||||||||:||.|||:......:||||||:::|::||...|:|
 Frog   167 LLSRSLLSYLIIDEAHCVSEWGHDFRPDYLRLGSLRSRIPHTPCVALTATATKQVQDDIIASLKL 231

  Fly   202 HQPVAQFSTPSFRKNLFYDIVYKNSIEDDFQHLADFARHCLGNPKEFKDTPKPQ---RGCGIVYC 263
            .|||:.|.||.||.|||||:..|:.:.|.:..|.:|....||       |..||   .|||||||
 Frog   232 RQPVSMFKTPCFRSNLFYDVQLKDLVGDPYGDLKEFCLKALG-------TKTPQGGFPGCGIVYC 289

  Fly   264 RTRDQVERMAIGVTKQGIGAVAYHAGLKTGERTEVQEAWMRGDQPIICATNSFGMGVDKPSVRFV 328
            ||||..|.:|:.::::|:.:..||||||.|:|..:|..||.|..|:|.||.||||||||.:||||
 Frog   290 RTRDACEEVAVQLSQRGVLSKPYHAGLKAGDRVTIQNDWMDGTVPVIVATISFGMGVDKANVRFV 354

  Fly   329 IHWDVPQNVAAYYQESGRAGRDGLQSYCRLYYGREDVRSIRFLLQNDAHRARG-RGDKELLTERA 392
            .||::.:::|.||||||||||||.|::|||||.|.|...:.||::.:..:|:. |||.:...:..
 Frog   355 AHWNIAKSLAGYYQESGRAGRDGKQAFCRLYYSRTDRDQVGFLIRKEIAQAQAKRGDNKASDKAG 419

  Fly   393 IKQFEKITEFCERTTCRHKLFSDFFGDPTPDCSGQCDVCKRPKKAEKALEIFHRLCMDDAFKSHI 457
            :..|:.:..|||.|.|||...:.:|||..|.|:..||.||.|...::.:|     .::..|:|..
 Frog   420 MAGFDAMVSFCEDTGCRHAAIAAYFGDEKPQCNKSCDSCKNPLAVKRQVE-----QLEGLFQSGR 479

  Fly   458 SLQDCAD--------------LYEGGRPGIKRAAQEYAGGESGSDDDSGQSHSSMAKRAKKESQD 508
            | :.|.:              ||||||.|       |.......|||.|.:..| |:..|:....
 Frog   480 S-RTCIEKPAGPKGPFGFEPGLYEGGRKG-------YGFARYDDDDDEGGAAES-AEDRKRVWNS 535

  Fly   509 FIKQQFNLRKQISAARQLEQETIAQISRVRMAEATEKKIAGLQATHREKYLTALIDALKANVDKC 573
            |.::|.||||    :::|| :.|.......:.:|:..||..|....||..|..|.:||..|....
 Frog   536 FYQKQMNLRK----SKELE-DFIPPSDDCPLKDASSDKIPKLTVKAREHCLNILEEALAKNARAA 595

  Fly   574 KDEPGQQPKSVLKYNDYEAMSVNMEYDVFRQNKVANMYRHALVKEISTIKKL------------- 625
            ..|         ...|.|:.:|::||:|||.:|:.|:|:.|:||::..|:.|             
 Frog   596 AAE---------HRTDVESCAVDLEYEVFRSSKLCNLYKAAIVKKVKEIEALKDGELHSALGSSN 651

  Fly   626 TEQTKLLPLLVDYIPKPETSSKGAWTGGSVAYFERKLKELE----EQRP---------------- 670
            :||....|....::...:..:......|:::.|:.....|.    |:||                
 Frog   652 SEQRTETPATDGFMSASQMLTSKCKRVGALSSFQSASDLLRTTQPERRPVESSQGTSQEMAASND 716

  Fly   671 QSLKEVP---KALKDRKGFKQENSKQ----------TSISSFF-----------KKEIKEEPIDS 711
            .|:.:.|   |.....|..:....:|          .:||.||           |.:::.:|.:.
 Frog   717 SSIPDKPDSKKVASPSKAARPSKKRQELANAAKKDSQNISKFFSSHCKAQPQSGKNDVQAKPGNP 781

  Fly   712 PIQEERVNIKSEQMDLE------------------ESTP------KDIASNHVKEES-------- 744
            .::|..::.|.:.:..:                  ||:|      :|..:..:.|.|        
 Frog   782 TLKEGSLSQKDDTLTSDGLQGEPPAPVSTELGEGAESSPEEQSLCRDTWAGQIVEPSEYNCRNVP 846

  Fly   745 -VTPESSSSDRELELQP-DSIIGERKFKLMSNGDGS---YDTHRRKRVSHETQPKEKESIKTKSS 804
             |.|..:.|   |.:|| ||..|:   .|..:|..|   :.....|.|..|::|:|.:.:.||:|
 Frog   847 AVEPSDTGS---LYVQPGDSPPGQ---PLQDHGRTSVSLFHPDPLKPVEDESEPEEHQEMSTKTS 905

  Fly   805 MQHLFGSFKSESEESNQSLNGFKTARQMLEENNSKLEGVPEKLPIKDGEKRVLENRADSIGFTSA 869
            .                                   |..|.|...:|.|||..|.: ||.|..  
 Frog   906 R-----------------------------------EEAPSKPRTRDREKRPAEGQ-DSEGPV-- 932

  Fly   870 REMLERSKQREGDDKSSNKLEKLGFISAREMLEKNKLNERCLDKKDVKEKKLESRETKRSLQNNE 934
                 |.:.|| :.|||:.|..:..:|..:            .||.|            :...|.
 Frog   933 -----RKRPRE-EIKSSSILAPVHKVSTNQ------------GKKKV------------TFDPNL 967

  Fly   935 LQHKQEEDRKDKASHRKTSKESLSNLKKEGSDSRVLQKDTKPETRNHQKTDVSKNVVQWLNPYYK 999
            ..|               .||..:.:.:..|.::|:   |..||     .||   ||::|.|:::
 Frog   968 CPH---------------DKEGTAKILQPPSGNKVM---TLKET-----ADV---VVKYLTPFFR 1006

  Fly  1000 R-KIATKELFKALAKLLTQRI 1019
            . |.|:|:||||.|:.|:..:
 Frog  1007 EGKFASKDLFKAFARHLSHHL 1027

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RecQ5NP_729983.1 RecQ 6..>442 CDD:223588 215/438 (49%)
DEAD 37..193 CDD:278688 87/155 (56%)
HELICc <257..359 CDD:238034 60/101 (59%)
RecQ_Zn_bind 364..431 CDD:292742 22/67 (33%)
recql5XP_031749855.1 RecQ 35..>462 CDD:223588 214/431 (50%)
RecQ5 667..811 CDD:399738 19/143 (13%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 192 1.000 Domainoid score I3163
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 504 1.000 Inparanoid score I1310
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D251827at33208
OrthoFinder 1 1.000 - - FOG0006219
OrthoInspector 1 1.000 - - oto103930
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X4493
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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