DRSC/TRiP Functional Genomics Resources

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Protein Alignment shd and cyp11c1

DIOPT Version :10

Sequence 1:NP_996074.1 Gene:shd / 39592 FlyBaseID:FBgn0003388 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_017206857.1 Gene:cyp11c1 / 791124 ZFINID:ZDB-GENE-070828-1 Length:701 Species:Danio rerio


Alignment Length:557 Identity:133/557 - (23%)
Similarity:219/557 - (39%) Gaps:85/557 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GCYCAL-HRHKLADIYLRPLLKNTLLEDFYHAELIQPEAPKRRRRGIWDIPGPKRIPFLGTK-WI 76
            |..||. |....|.:.:|||.:::  .....|.|.|                  .||..|:. |:
Zfish   190 GSVCARPHLCVRASVCVRPLHQSS--RSAGAARLFQ------------------EIPDTGSNGWM 234

  Fly    77 FLL-FFRRYKMTKLHEVYADLNRQYGDIVLEVMPSNVPIVHLYNRDDLEKVLKYPSKYPFR---- 136
            .|| |:|..:.:::|:...:..|:.|.|..|         ||.::..:..:|...:...||    
Zfish   235 NLLRFWRDGRFSRMHKHMEESFRRLGPIYRE---------HLGSQSSVNIMLPMDTGELFRSEGL 290

  Fly   137 -PPTEIIVMYRQSRPDRYASVGIVNEQGPMWQRLRSSLTSSITSPRVLQNFLPALNAVCDDFIEL 200
             |....:..:...|..|..|.|:..:.|..|:..|..|...:.....:..|||.|:.|..||...
Zfish   291 HPRRMTLQPWATHRETRRHSKGVFLKNGTEWRADRLLLNREVMVSSSVHRFLPLLDEVAQDFCRS 355

  Fly   201 LRARRDPD--------TLVVPNFEELANLMGLEAVCTLMLGRRMG-FLAIDTKQPQKI-----SQ 251
            ||.|...|        ||.:....:|.. ..|||.|.::.|.|:| |.:..:.:.::.     ..
Zfish   356 LRRRVQADGFEKAGQHTLTLDPSPDLFR-FALEASCHVLYGERIGLFSSCPSDESERFISAVERM 419

  Fly   252 LAAAVKQLFISQRDSYYGLGLWKYFPTKTYRDFARAEDLIYDVISEIIDHELEELK-KSAACEDD 315
            ||.....|::..|       |........:...|.|.|.|:....:.|....:.|: :.:|..|.
Zfish   420 LATTPPLLYLPPR-------LLLRLRASLWTTHATAWDDIFSHAEQRIQRSYQRLQARPSAAPDC 477

  Fly   316 EAAGLRSIFLNILELKDLDIRDKKSAIIDFIAAGIETLANTLLFVLSSVTGDPGAM----PRILS 376
            ...|   :...::|...|.:...::.|.:.:|.|::|.|..|.|.|..:..:|...    .::||
Zfish   478 SFPG---VLGKLMEAGQLSLELIRANITELMAGGVDTTAVPLQFALFELARNPDVQECVRAQVLS 539

  Fly   377 EFCEYRDTNILQDALTNATYTKACIQESYRLRPTAFCLARILEEDMELSGYSLNAGTVV-LCQNM 440
            .:.:.....:  .||..|...|..|:|:.||.|....:.|....|:.|..|.:.|||:| :|...
Zfish   540 SWQQASGDPL--KALQGAPLLKGTIKETLRLYPVGITVQRYPVRDIVLQNYHVPAGTLVQVCLYP 602

  Fly   441 IACHKDSNFQGAKQFTPERWIDPATENFTVNVDNASI----VVPFGVGRRSCPGKRFVEMEVVLL 501
            :. .....|...:.|.|.||        :.:.|..|.    .:.||.|.|.|.|:|..|.|:.||
Zfish   603 LG-RSAEVFSRPECFDPSRW--------SADADAGSAGGFRSLAFGFGSRQCVGRRIAENEMQLL 658

  Fly   502 LAKMVLAF--DVSFVKPLETEFEFLLAPKTPLSLRLS 536
            |..::..|  .||..:.|.|::..:|.|:.|..:..|
Zfish   659 LMHILRTFKLTVSSTEELSTKYTLILQPECPPRITFS 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shdNP_996074.1 CYP24A1-like 98..532 CDD:410677 112/464 (24%)
cyp11c1XP_017206857.1 Synaphin 1..125 CDD:461755
Complexin_NTD_CPLX_III_IV 46..87 CDD:439283
cytochrome_P450 256..694 CDD:477761 112/468 (24%)
Blue background indicates that the domain is not in the aligned region.

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