DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment shd and cyp11c1

DIOPT Version :9

Sequence 1:NP_001261843.1 Gene:shd / 39592 FlyBaseID:FBgn0003388 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_017206857.1 Gene:cyp11c1 / 791124 ZFINID:ZDB-GENE-070828-1 Length:701 Species:Danio rerio


Alignment Length:557 Identity:133/557 - (23%)
Similarity:219/557 - (39%) Gaps:85/557 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 GCYCAL-HRHKLADIYLRPLLKNTLLEDFYHAELIQPEAPKRRRRGIWDIPGPKRIPFLGTK-WI 76
            |..||. |....|.:.:|||.:::  .....|.|.|                  .||..|:. |:
Zfish   190 GSVCARPHLCVRASVCVRPLHQSS--RSAGAARLFQ------------------EIPDTGSNGWM 234

  Fly    77 FLL-FFRRYKMTKLHEVYADLNRQYGDIVLEVMPSNVPIVHLYNRDDLEKVLKYPSKYPFR---- 136
            .|| |:|..:.:::|:...:..|:.|.|..|         ||.::..:..:|...:...||    
Zfish   235 NLLRFWRDGRFSRMHKHMEESFRRLGPIYRE---------HLGSQSSVNIMLPMDTGELFRSEGL 290

  Fly   137 -PPTEIIVMYRQSRPDRYASVGIVNEQGPMWQRLRSSLTSSITSPRVLQNFLPALNAVCDDFIEL 200
             |....:..:...|..|..|.|:..:.|..|:..|..|...:.....:..|||.|:.|..||...
Zfish   291 HPRRMTLQPWATHRETRRHSKGVFLKNGTEWRADRLLLNREVMVSSSVHRFLPLLDEVAQDFCRS 355

  Fly   201 LRARRDPD--------TLVVPNFEELANLMGLEAVCTLMLGRRMG-FLAIDTKQPQKI-----SQ 251
            ||.|...|        ||.:....:|.. ..|||.|.::.|.|:| |.:..:.:.::.     ..
Zfish   356 LRRRVQADGFEKAGQHTLTLDPSPDLFR-FALEASCHVLYGERIGLFSSCPSDESERFISAVERM 419

  Fly   252 LAAAVKQLFISQRDSYYGLGLWKYFPTKTYRDFARAEDLIYDVISEIIDHELEELK-KSAACEDD 315
            ||.....|::..|       |........:...|.|.|.|:....:.|....:.|: :.:|..|.
Zfish   420 LATTPPLLYLPPR-------LLLRLRASLWTTHATAWDDIFSHAEQRIQRSYQRLQARPSAAPDC 477

  Fly   316 EAAGLRSIFLNILELKDLDIRDKKSAIIDFIAAGIETLANTLLFVLSSVTGDPGAM----PRILS 376
            ...|   :...::|...|.:...::.|.:.:|.|::|.|..|.|.|..:..:|...    .::||
Zfish   478 SFPG---VLGKLMEAGQLSLELIRANITELMAGGVDTTAVPLQFALFELARNPDVQECVRAQVLS 539

  Fly   377 EFCEYRDTNILQDALTNATYTKACIQESYRLRPTAFCLARILEEDMELSGYSLNAGTVV-LCQNM 440
            .:.:.....:  .||..|...|..|:|:.||.|....:.|....|:.|..|.:.|||:| :|...
Zfish   540 SWQQASGDPL--KALQGAPLLKGTIKETLRLYPVGITVQRYPVRDIVLQNYHVPAGTLVQVCLYP 602

  Fly   441 IACHKDSNFQGAKQFTPERWIDPATENFTVNVDNASI----VVPFGVGRRSCPGKRFVEMEVVLL 501
            :. .....|...:.|.|.||        :.:.|..|.    .:.||.|.|.|.|:|..|.|:.||
Zfish   603 LG-RSAEVFSRPECFDPSRW--------SADADAGSAGGFRSLAFGFGSRQCVGRRIAENEMQLL 658

  Fly   502 LAKMVLAF--DVSFVKPLETEFEFLLAPKTPLSLRLS 536
            |..::..|  .||..:.|.|::..:|.|:.|..:..|
Zfish   659 LMHILRTFKLTVSSTEELSTKYTLILQPECPPRITFS 695

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shdNP_001261843.1 p450 63..528 CDD:299894 119/497 (24%)
cyp11c1XP_017206857.1 None


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0159
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D185685at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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