DRSC/TRiP Functional Genomics Resources

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Protein Alignment shd and si:ch211-113j14.1

DIOPT Version :9

Sequence 1:NP_001261843.1 Gene:shd / 39592 FlyBaseID:FBgn0003388 Length:540 Species:Drosophila melanogaster
Sequence 2:XP_686522.4 Gene:si:ch211-113j14.1 / 558239 ZFINID:ZDB-GENE-120215-110 Length:573 Species:Danio rerio


Alignment Length:491 Identity:128/491 - (26%)
Similarity:231/491 - (47%) Gaps:37/491 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    61 DIPGPKRIPFLGTKWIFLLFFRRYKMTKLHEVYADLNRQYGDIVLEVM-PSNVPIVHLYNRDDLE 124
            |:|||.    |.|. ::.||.:.| ..|.|.:..:..|.||.|..... |.:|  :::...|.:.
Zfish   106 DLPGPN----LATT-VYWLFVKGY-ADKSHAMQVEHKRLYGPIWRSRFGPFDV--INVAGADLIA 162

  Fly   125 KVLKYPSKYPFRPPTEIIVMYRQSRPDRYASVGIVNEQGPMWQRLRSSLTSSITSPRVLQNFLPA 189
            :|::...:||.|..   :..:|:.|..|..:.||..:.||.|.|:||:|...:...:.:..:.|.
Zfish   163 QVIRQEGRYPVRTD---LPHWREYRDMRGQAYGIHVDTGPEWYRIRSALNPKMLKLKEVTAYAPI 224

  Fly   190 LNAVCDDF---IELLRARRDPDTLVVPNFEELANLMGLEAVCTLMLGRRMGFLAIDTKQPQKISQ 251
            ::.|..|.   :||||. |.||.:.|.:........|.|.:.:::...|:|  .:..:.|....:
Zfish   225 IHEVVSDLLQRLELLRL-RSPDQITVSDLASELYKFGFEGISSILFETRLG--CLQEEIPTDTLR 286

  Fly   252 LAAAVKQ-LFISQRDSYYGLGLWKYFPTKTYRDFARAEDLIYDVISEIIDHELEELKKSAACEDD 315
            ..:||.: |.:|:...::.......||  .::.|.:|.|.:|||...:||.::.|::...| ..:
Zfish   287 FISAVNEMLALSETVLFFPRWTRHIFP--FWKRFVQAWDELYDVARHLIDKKVNEIRDQVA-RGE 348

  Fly   316 EAAGLRSIFLNILELKDLDIRDKKSAIIDFIAAGIETLANTLLFVLSSVTGDPGAMPRILSEF-- 378
            |..|:...:|  |....|.:.:...::.:.:..|::|.:|||.:.|..:..:|....|:.:|.  
Zfish   349 EVEGMYLTYL--LSSNKLSLGEVYISLTELLLGGVDTTSNTLSWTLYHLARNPEIQKRLHNEIVS 411

  Fly   379 -CEYRDTNILQDALTNATYTKACIQESYRLRPTAFCLARI-LEEDMELSGYSLNAGTVV-LCQNM 440
             |..:......| ||...|.||.|:|..|:.|......|: ::.|:.:..|.....|.. ||...
Zfish   412 VCPNKKVPNTDD-LTKMPYMKAVIKEILRMYPVVPGNGRLTVDSDIVVDNYWFPKKTQFHLCHYA 475

  Fly   441 IACHKDSNFQGAKQFTPERWIDPATENFTVNVDNASIVVPFGVGRRSCPGKRFVEMEVVLLLAKM 505
            :: |.::||..|::|.|||||..:...   :..:....||||||.|:|.|||..|:|:...|:::
Zfish   476 VS-HDENNFPDAERFVPERWIRDSPSR---SQHHPYSSVPFGVGVRACVGKRVAELEMYFALSRL 536

  Fly   506 VLAFDV---SFVKPLETEFEFLLAPKTPLSLRLSDR 538
            :..::|   :....::.:...||.|..|:.|:...|
Zfish   537 MQQYEVRTKAGSPSIQPKTRTLLIPSQPIDLQFIPR 572

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shdNP_001261843.1 p450 63..528 CDD:299894 123/477 (26%)
si:ch211-113j14.1XP_686522.4 p450 108..569 CDD:278495 126/484 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E2759_KOG0159
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D185685at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
43.820

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