DRSC/TRiP Functional Genomics Resources

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Protein Alignment shd and Cyp11b1

DIOPT Version :9

Sequence 1:NP_001261843.1 Gene:shd / 39592 FlyBaseID:FBgn0003388 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_036669.3 Gene:Cyp11b1 / 500892 RGDID:2453 Length:499 Species:Rattus norvegicus


Alignment Length:500 Identity:112/500 - (22%)
Similarity:217/500 - (43%) Gaps:77/500 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 PKRI-PFLG------TKWIFLLFFRRYK-----MTKLHEVYADLNRQYGDIVLEVMPSNVPIVHL 117
            ||.: ||..      .||:.::...|.:     ..::|:.:.:|..     :.........||.:
  Rat    32 PKTLKPFEAIPQYSRNKWLKMIQILREQGQENLHLEMHQAFQELGP-----IFRHSAGGAQIVSV 91

  Fly   118 YNRDDLEKVLKYPSKYPFRPPTEIIVMYRQSRPDRYASVGIVNEQGPMWQRLRSSLTSSITSPRV 182
            ...:|.||:.:..|..|.|.|.|..|.:|:.|..|.   |:....|..|:..|..|..::.||:.
  Rat    92 MLPEDAEKLHQVESILPHRMPLEPWVAHRELRGLRR---GVFLLNGADWRFNRLQLNPNMLSPKA 153

  Fly   183 LQNFLPALNAVCDDFIELLRARRDPDTLVVPNFEELANLMG--------------LEAVCTLMLG 233
            :|:|:|.::.|..||:|.|:.|.            |.|:.|              :||...::.|
  Rat   154 IQSFVPFVDVVARDFVENLKKRM------------LENVHGSMSINIQSNMFNYTMEASHFVISG 206

  Fly   234 RRMGFLAIDTKQPQKISQLAAAVKQLFISQRD-SYYGLGLWKYFPTKTYRDFARAEDLIYDVISE 297
            .|:|....|.| |:.:: ...|:..:|.|... .:....|.::..|:.:::...:.|:|.:.:::
  Rat   207 ERLGLTGHDLK-PESVT-FTHALHSMFKSTTQLMFLPKSLTRWTSTRVWKEHFDSWDIISEYVTK 269

  Fly   298 IIDH---ELEELKKSAACEDDEAAGLRSIFLNILELKDLDIRDKKSAIIDFIAAGIETLANTLLF 359
            .|.:   ||.|.::.:.....|.....::.::.:....:::          ||..::|.|.:|:.
  Rat   270 CIKNVYRELAEGRQQSWSVISEMVAQSTLSMDAIHANSMEL----------IAGSVDTTAISLVM 324

  Fly   360 VLSSVTGDPGAMPRILSEFCEYRDTNIL---QDALTNATYTKACIQESYRLRPTAFCLARILEED 421
            .|..:..:|.....:..|... .:.:|:   |.|:::....:|.::|:.||.|....:.||:..|
  Rat   325 TLFELARNPDVQQALRQESLA-AEASIVANPQKAMSDLPLLRAALKETLRLYPVGSFVERIVHSD 388

  Fly   422 MELSGYSLNAGTVVLCQNMIACHKDSNFQGAKQFTPERWIDPATENFTVNVDNASIVVPFGVGRR 486
            :.|..|.:.|||.|:..........:.|...:::.|:||:: ...:|.        .:.||.|.|
  Rat   389 LVLQNYHVPAGTFVIIYLYSMGRNPAVFPRPERYMPQRWLE-RKRSFQ--------HLAFGFGMR 444

  Fly   487 SCPGKRFVEMEVVLLLAKMVLAFDVSFVK--PLETEFEFLLAPKT 529
            .|.|:|..|:|::|||..|:..|.|..::  .::..|.|||.|.:
  Rat   445 QCLGRRLAEVEMLLLLHHMLKTFQVETLRQEDMQMVFRFLLMPSS 489

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shdNP_001261843.1 p450 63..528 CDD:299894 111/497 (22%)
Cyp11b1NP_036669.3 p450 42..495 CDD:278495 108/489 (22%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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