DRSC/TRiP Functional Genomics Resources

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Protein Alignment shd and cyp27c1

DIOPT Version :9

Sequence 1:NP_001261843.1 Gene:shd / 39592 FlyBaseID:FBgn0003388 Length:540 Species:Drosophila melanogaster
Sequence 2:NP_001011341.1 Gene:cyp27c1 / 496805 XenbaseID:XB-GENE-6257635 Length:469 Species:Xenopus tropicalis


Alignment Length:503 Identity:126/503 - (25%)
Similarity:231/503 - (45%) Gaps:61/503 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 IPGPKRIPFLGTKWIFLLFFRRYKMTKLHEVYADLNRQYGDIVLEVMPSNVPIVHLYNRDDLEKV 126
            :|||..:..|      :.||.|....::.|:.....||||.|......... :|.:.::|.:.:|
 Frog     1 MPGPSTMANL------VEFFWRDGFGRIQEIQQKHARQYGRIFKSHFGPQF-VVSIADKDMVAQV 58

  Fly   127 LKYPSKYPFRPPTEIIVMYRQSRPDRYASVGIVNEQGPMWQRLRSSLTSSITSPRVLQNFLPALN 191
            |:.....|.|...|....||:.|.   .|.|:::.:|..|..:||.|...|..||.:..:...:|
 Frog    59 LRAERDAPQRANMESWHEYRELRG---RSTGLISAEGEKWLNMRSVLRQKILRPRDVAMYSGGVN 120

  Fly   192 AVCDDFIELLRARR--DPDTLVVPNFEELANLMGLEAVCTLMLGRRMGFLAIDTKQPQKISQLAA 254
            .|.:|.::.:|..|  :.|.|.|.|..:|.....:||:.|::...|:|  .:|.:.||:..:...
 Frog   121 EVVEDLVKRIRKLRVQESDGLTVTNVNDLYFKYSMEAIATILYECRLG--CLDDQIPQQTKEYIE 183

  Fly   255 AVKQLFISQRDSYYGLGLWKYFP---TKTYRDFARAEDLIYDVISEIIDHELEELKKSAACEDDE 316
            |::.:|...:.:.|...:.|:..   .|.:|:|.|:.|.::......:|..|.:: :|...:.:|
 Frog   184 ALELMFSMFKTTMYAGAIPKWLRPLIPKPWREFCRSWDGLFKFSQIHVDDRLRQI-ESQLEKGEE 247

  Fly   317 AAGLRSIFLNILELKDLDIRDKKSAIIDFIAAGIETLANTLLFVLSSVTGDPGAMPRILSEFCEY 381
            ..|  .:..::|..|:||:.:..:.:.:.:.||::|.:.||.:....:..:||....:..:..: 
 Frog   248 VQG--GVLTHLLLSKELDLEEIYANMTEMLLAGVDTTSFTLSWATYLLAKNPGIQEAVYQQIVQ- 309

  Fly   382 RDTNILQDALTNA------TYTKACIQESYRLRPTAFCLARILEEDMELSGYSLNAGTVVLCQNM 440
               |..:|.:..|      ...:|.::|:.||.|......|:.::|:.:.||.:..||     .:
 Frog   310 ---NFGKDQVPTAEDVPKMPLVRAVVKETLRLFPVLPGNGRVTQDDLVVGGYFIPKGT-----QL 366

  Fly   441 IACHKDSN-----FQGAKQFTPERWIDPAT----ENFTVNVDNASIVVPFGVGRRSCPGKRFVEM 496
            ..||..::     |..|::|.|||||....    |||.        .:|||.|.|||.|:|..|:
 Frog   367 ALCHYSTSYDAECFPAAEEFRPERWIRSGNLERKENFG--------SIPFGYGIRSCIGRRVAEL 423

  Fly   497 EVVLLLAKMVLAFDVSFVKP------LETEFEFLLAPKTPLSLRLSDR 538
            |:.|||.:::..|:   :||      :..:...||.|...:::|..||
 Frog   424 EMHLLLIQLLQNFE---IKPSPQTTTVLPKTHGLLCPGGKINVRFVDR 468

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
shdNP_001261843.1 p450 63..528 CDD:299894 122/490 (25%)
cyp27c1NP_001011341.1 p450 2..457 CDD:306555 122/489 (25%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D185685at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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